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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE137
Library SL
(Link to library)
Clone ID SLE137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15038-1
Original site URL
Representative seq. ID SLE137Z
(Link to Original site)
Representative DNA sequence 
>SLE137 (SLE137Q) /CSM/SL/SLE1-B/SLE137Q.Seq.d/
XXXXXXXXXXAAAGCTAATCTCGATGTTGGTCTCGCTCGTACCTCAACTGGTGCTAAAGT
CTTTGCTGTCCTNAAAGGTGCTGTCGACGGTGGTATCTACGTCCCACACGGTGAAACCCG
TTTCGCTGGTTACAACGCTGAAAGCAAGAAATTAAACGCTGAAACTCTCCGTGGTTACAT
CTTTGGTAAACACGTTGCCTCTTACATGACCTTATTACAAACTGAAGACGAAGATGCCTA
CAAAAAGATCTTCTCTCAATACATCAAAAACGGTGTTGCTCCAAAAGATATCGAAACCAT
CTATGCCAACGCTCACAAAGCCATCAGAGCCAACCCAGCCCCAGCTGCCAAATCAACCAA
ATCATACAAAGATATCAAATCCAAGAACCTCAGCAAGAGAACCCTCAAACAAAAGAAAGC
TCGTGTTGCTTCCATCAAAGCTTCATACAAAGCTCGTCTTTAAACATCTTGTTCTTTTTC
AAGCTTTTTTAATTTAAACAATAAAAAATTTTAAATTGAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5.17
Translated Amino Acid sequence 
---ANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIF
GKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKS
YKDIKSKNLSKRTLKQKKARVASIKASYKARL*tscsfssffnlnnkkf*iekkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---klismlvslvpqlvlksllsxkvlstvvstshtvkpvslvttlkarn*tlklsvvts
lvntlplt*pyyklktkmptkrsslntsktvllqkiskpsmptltkpseptqpqlpnqpn
htkisnprtsarepsnkrklvllpsklhtklvfkhlvlfqafli*tiknfklkkkkkk


Frame B:
---s*srcwsrsylnwc*slccpxrccrrwylrptr*npfrwlqr*kqeikr*nspwlhl
w*trcllhdlitn*rrrclqkdllsihqkrccskryrnhlcqrsqshqsqpspscqinqi
iqryqiqepqqenpqtkessccfhqsfiqssslnilfffklf*fkq*kiln*kkkkkk


Frame C:
---ANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIF
GKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKS
YKDIKSKNLSKRTLKQKKARVASIKASYKARL*tscsfssffnlnnkkf*iekkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA140 (VSA140Q) /CSM/VS/VSA1-B/VSA140Q.Seq.d/                       1001   0.0
SLE137 (SLE137Q) /CSM/SL/SLE1-B/SLE137Q.Seq.d/                       1001   0.0
SLB250 (SLB250Q) /CSM/SL/SLB2-C/SLB250Q.Seq.d/                       1001   0.0
FCL-AD13 (FCL-AD13Q) /CSM/FCL/FCL-AD/FCL-AD13Q.Seq.d/                1001   0.0
FC-BA05 (FC-BA05Q) /CSM/FC/FC-BA/FC-BA05Q.Seq.d/                     1001   0.0
FC-186 (FC-186Q) /CSM/CG/CG-FC/FC-186Q.Seq.d/                        1001   0.0
VFG859 (VFG859Q) /CSM/VF/VFG8-C/VFG859Q.Seq.d/                        995   0.0
VSC396 (VSC396Q) /CSM/VS/VSC3-D/VSC396Q.Seq.d/                        993   0.0
FC-AK01 (FC-AK01Q) /CSM/FC/FC-AK/FC-AK01Q.Seq.d/                      993   0.0
VSD336 (VSD336Q) /CSM/VS/VSD3-B/VSD336Q.Seq.d/                        987   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284502) Dictyostelium discoideum gamete cDNA clone:FC-BA0...   882   0.0    1
(AU261306) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU034656) Dictyostelium discoideum slug cDNA, clone SLE137.      882   0.0    1
(AU033633) Dictyostelium discoideum slug cDNA, clone SLB250.      882   0.0    1
(BJ435438) Dictyostelium discoideum cDNA clone:ddv27j04, 3' ...   882   0.0    1
(BJ432169) Dictyostelium discoideum cDNA clone:ddv17k22, 3' ...   882   0.0    1
(BJ431546) Dictyostelium discoideum cDNA clone:ddv14f16, 3' ...   882   0.0    1
(BJ353965) Dictyostelium discoideum cDNA clone:dda52f06, 3' ...   882   0.0    1
(AU263864) Dictyostelium discoideum vegetative cDNA clone:VS...   874   0.0    1
(AU262537) Dictyostelium discoideum vegetative cDNA clone:VS...   874   0.0    1
dna update 2009. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XX3) RecName: Full=60S ribosomal protein L5;                      294   8e-79
EZ000569_1(EZ000569|pid:none) TSA: Culex tarsalis Ctar-553 60S r...   160   1e-38
BC041227_1(BC041227|pid:none) Xenopus laevis 60S ribosomal prote...   154   2e-36
BC059751_1(BC059751|pid:none) Xenopus tropicalis ribosomal prote...   153   3e-36
BT058604_1(BT058604|pid:none) Salmo salar clone Contig2421 60S r...   153   3e-36
BT046397_1(BT046397|pid:none) Salmo salar clone ssal-evf-506-137...   153   3e-36
BT073256_1(BT073256|pid:none) Oncorhynchus mykiss clone omyk-evn...   153   3e-36
AY769272_1(AY769272|pid:none) Bombyx mori ribosomal protein L5 (...   153   3e-36
AJ843088_1(AJ843088|pid:none) Platichthys flesus partial mRNA fo...   152   4e-36
BT075631_1(BT075631|pid:none) Osmerus mordax clone omor-eva-516-...   152   4e-36
protein update 2009. 6. 2
PSORT 

 psg: 0.79  gvh: 0.48  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLE137 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE137Z
3' end seq. 
>SLE137Z.Seq
----------AAAGCTAATCTCGATGTTGGTCTCGCTCGTACCTCAACTGGTGCTAAAGT
CTTTGCTGTCCTNAAAGGTGCTGTCGACGGTGGTATCTACGTCCCACACGGTGAAACCCG
TTTCGCTGGTTACAACGCTGAAAGCAAGAAATTAAACGCTGAAACTCTCCGTGGTTACAT
CTTTGGTAAACACGTTGCCTCTTACATGACCTTATTACAAACTGAAGACGAAGATGCCTA
CAAAAAGATCTTCTCTCAATACATCAAAAACGGTGTTGCTCCAAAAGATATCGAAACCAT
CTATGCCAACGCTCACAAAGCCATCAGAGCCAACCCAGCCCCAGCTGCCAAATCAACCAA
ATCATACAAAGATATCAAATCCAAGAACCTCAGCAAGAGAACCCTCAAACAAAAGAAAGC
TCGTGTTGCTTCCATCAAAGCTTCATACAAAGCTCGTCTTTAAACATCTTGTTCTTTTTC
AAGCTTTTTTAATTTAAACAATAAAAAATTTTAAATTGAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 528
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -