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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF689
Library SL
(Link to library)
Clone ID SLF689
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16284-1
Original site URL
Representative seq. ID SLF689Z
(Link to Original site)
Representative DNA sequence 
>SLF689 (SLF689Q) /CSM/SL/SLF6-D/SLF689Q.Seq.d/
XXXXXXXXXXTGCTTTAGCCATCGAAGATAGTATCGGTGGTACTTTCACAATTTCAAATG
GTGGAGTTTTCGGTTCAATGTTTGGTACCCCAATCATTAATCCACCACAATCTGCCATCC
TTGGTATGCACGCCATCAAAGATAGACCATACGTTGTCAATGGTCAAGTTGTAGTTAGAC
CAATCATGTATTTAGCTCTTACCTATGATCACAGAATTATCGATGGTAGAGAAGCCGTAA
CTTTCTTAAAGAAAATTAAAGATGTTCTCGAAAATCCAGAAAGAATTTTATTAGAATTAT
AAATTAAAAATAAAATTTAAAAATAAAATA
sequence update 1998. 9.10
Translated Amino Acid sequence 
---ALAIEDSIGGTFTISNGGVFGSMFGTPIINPPQSAILGMHAIKDRPYVVNGQVVVRP
IMYLALTYDHRIIDGREAVTFLKKIKDVLENPERILLEL*iknki*k*n
Translated Amino Acid sequence (All Frames) 
Frame A:
---ALAIEDSIGGTFTISNGGVFGSMFGTPIINPPQSAILGMHAIKDRPYVVNGQVVVRP
IMYLALTYDHRIIDGREAVTFLKKIKDVLENPERILLEL*iknki*k*n


Frame B:
---l*pskivsvvlsqfqmvefsvqclvpqslihhnlpslvctpskidhtlsmvkl*ldq
sci*llpmitelsmvekp*ls*rklkmfskiqkefy*nyklkikfknki


Frame C:
---fshrr*yrwyfhnfkwwsfrfnvwypnh*sttichpwyarhqr*tircqwsscs*tn
hvfssyl*sqnyrw*rsrnflken*rcsrksrknfiriin*k*nlkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFK728 (VFK728Q) /CSM/VF/VFK7-B/VFK728Q.Seq.d/                        571   e-162
VFG821 (VFG821Q) /CSM/VF/VFG8-A/VFG821Q.Seq.d/                        571   e-162
VFE243 (VFE243Q) /CSM/VF/VFE2-B/VFE243Q.Seq.d/                        571   e-162
SLI726 (SLI726Q) /CSM/SL/SLI7-B/SLI726Q.Seq.d/                        571   e-162
SLF689 (SLF689Q) /CSM/SL/SLF6-D/SLF689Q.Seq.d/                        571   e-162
SLD435 (SLD435Q) /CSM/SL/SLD4-B/SLD435Q.Seq.d/                        571   e-162
SLB540 (SLB540Q) /CSM/SL/SLB5-B/SLB540Q.Seq.d/                        571   e-162
SLA390 (SLA390Q) /CSM/SL/SLA3-D/SLA390Q.Seq.d/                        571   e-162
SFJ701 (SFJ701Q) /CSM/SF/SFJ7-A/SFJ701Q.Seq.d/                        571   e-162
SFE378 (SFE378Q) /CSM/SF/SFE3-D/SFE378Q.Seq.d/                        571   e-162
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   478   e-131  1
(AU053477) Dictyostelium discoideum slug cDNA, clone SLI726.      478   e-131  1
(AU053102) Dictyostelium discoideum slug cDNA, clone SLF689.      478   e-131  1
(AU052508) Dictyostelium discoideum slug cDNA, clone SLD435.      478   e-131  1
(AU040088) Dictyostelium discoideum slug cDNA, clone SLA390.      478   e-131  1
(AU033865) Dictyostelium discoideum slug cDNA, clone SLB540.      478   e-131  1
(C23830) Dictyostelium discoideum gamete cDNA, clone FCL-AC09.    478   e-131  1
(BJ435326) Dictyostelium discoideum cDNA clone:ddv26e19, 3' ...   478   e-131  1
(BJ433585) Dictyostelium discoideum cDNA clone:ddv22h07, 3' ...   478   e-131  1
(BJ431425) Dictyostelium discoideum cDNA clone:ddv14j06, 3' ...   478   e-131  1
dna update 2009. 5.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC045500_1(BC045500|pid:none) Danio rerio dihydrolipoamide S-suc...   147   1e-34
BC065943_1(BC065943|pid:none) Danio rerio dihydrolipoamide S-suc...   147   1e-34
(Q9N0F1) RecName: Full=Dihydrolipoyllysine-residue succinyltrans...   147   1e-34
AK149664_1(AK149664|pid:none) Mus musculus bone marrow macrophag...   147   1e-34
DQ086164_1(DQ086164|pid:none) Ictalurus punctatus dihydrolipoami...   146   2e-34
(Q01205) RecName: Full=Dihydrolipoyllysine-residue succinyltrans...   145   4e-34
A41015(A41015) dihydrolipoamide S-succinyltransferase (EC 2.3.1....   145   4e-34
L37418_1(L37418|pid:none) Homo sapiens dihydrolipoamide succinyl...   145   5e-34
D26535_1(D26535|pid:none) Homo sapiens gene for dihydrolipoamide...   145   5e-34
AK299505_1(AK299505|pid:none) Homo sapiens cDNA FLJ55034 complet...   145   5e-34
protein update 2009. 6. 5
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLF689 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF689Z
3' end seq. 
>SLF689Z.Seq
----------TGCTTTAGCCATCGAAGATAGTATCGGTGGTACTTTCACAATTTCAAATG
GTGGAGTTTTCGGTTCAATGTTTGGTACCCCAATCATTAATCCACCACAATCTGCCATCC
TTGGTATGCACGCCATCAAAGATAGACCATACGTTGTCAATGGTCAAGTTGTAGTTAGAC
CAATCATGTATTTAGCTCTTACCTATGATCACAGAATTATCGATGGTAGAGAAGCCGTAA
CTTTCTTAAAGAAAATTAAAGATGTTCTCGAAAATCCAGAAAGAATTTTATTAGAATTAT
AAATTAAAAATAAAATTTAAAAATAAAATA
Length of 3' end seq. 320
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -