SLH221
Library SL
(Link to library)
Clone ID SLH221
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SLH221Z
(Link to Original site)
Representative DNA sequence
>SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/
XXXXXXXXXXAACCAAATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGA
ATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATA
TGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGAT
GATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGT
GAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGAT
CGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGATTATGATGGCCGT
GACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGAT
GATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGAT
TGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGATGAA
TGGGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATATTAATACAAATAAT
TTTTT
sequence update 1998. 7. 2
Translated Amino Acid sequence
---PNSCARDEKCVATKDRIICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKARCDD
VECPDFHRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRD
GDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQDANDEW
DY*ainflkknnnnintnnf


Translated Amino Acid sequence (All Frames)
Frame A:
---tkfmcqr*kmcchqrqnhlcktnl**yslssklplhmw**n*wckmcsrl*eskm**
crmsrfp*mc*ktwwylkl*i*stkttkip*lg*k*k**s*l**s*l****i*w*l*wp*
r*l*w*l*w*l***qllw***l***lgq***lg**lg**lgq*rw**le***lprck**m
gllsh*ffkkk***y*yk*ff


Frame B:
---PNSCARDEKCVATKDRIICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKARCDD
VECPDFHRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRD
GDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQDANDEW
DY*ainflkknnnnintnnf


Frame C:
---qihvpemknvlppktesfv*nqlviilvvlqitiayvviklmv*nvfqivrkqdvmm
snvqisidvlkdvvvs*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmvimmavt
vtmmvimmvimmmtiimvmmtmimigtmimigvmigimigtmkmviigmmmtskmqmmng
tikplif*kkiiiiliqiif


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/ 559 e-158
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/ 559 e-158
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/ 559 e-158
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/ 559 e-158
SLG628 (SLG628Q) /CSM/SL/SLG6-B/SLG628Q.Seq.d/ 559 e-158
SLE585 (SLE585Q) /CSM/SL/SLE5-D/SLE585Q.Seq.d/ 559 e-158
SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/ 559 e-158
SLE191 (SLE191Q) /CSM/SL/SLE1-D/SLE191Q.Seq.d/ 559 e-158
SLC840 (SLC840Q) /CSM/SL/SLC8-B/SLC840Q.Seq.d/ 559 e-158
SLC301 (SLC301Q) /CSM/SL/SLC3-A/SLC301Q.Seq.d/ 559 e-158

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039233) Dictyostelium discoideum slug cDNA, clone SLH221. 537 0.0 3
(AU039402) Dictyostelium discoideum slug cDNA, clone SLH722. 537 0.0 3
(AU052191) Dictyostelium discoideum slug cDNA, clone SLA206. 537 0.0 3
(AU061073) Dictyostelium discoideum slug cDNA, clone SLC840. 537 0.0 3
(AU034689) Dictyostelium discoideum slug cDNA, clone SLE191. 537 0.0 3
(AU039872) Dictyostelium discoideum slug cDNA, clone SLG628. 537 0.0 3
(AU034735) Dictyostelium discoideum slug cDNA, clone SLE255. 537 0.0 3
(AU033560) Dictyostelium discoideum slug cDNA, clone SLB168. 537 0.0 3
(AU039918) Dictyostelium discoideum slug cDNA, clone SLG753. 537 0.0 3
(AU039455) Dictyostelium discoideum slug cDNA, clone SLH820. 537 0.0 3
dna update 2009. 6. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 212 7e-54
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 89 9e-17
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 88 2e-16
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.010
AK126919_1(AK126919|pid:none) Homo sapiens cDNA FLJ44971 fis, cl... 40 0.049
AK091762_1(AK091762|pid:none) Homo sapiens cDNA FLJ34443 fis, cl... 40 0.049
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 40 0.065
AX112197_1(AX112197|pid:none) Sequence 1 from Patent WO0127289. ... 39 0.11
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 39 0.14
D90272_1(D90272|pid:none) Tachypleus tridentatus mRNA for limulu... 39 0.14
protein update 2009. 6. 4
PSORT

psg: 0.55 gvh: 0.42 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
28.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SLH221 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH221Z
3' end seq.
>SLH221Z.Seq
----------AACCAAATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGA
ATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATA
TGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGAT
GATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGT
GAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGAT
CGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGATTATGATGGCCGT
GACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGAT
GATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGAT
TGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGATGAA
TGGGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATATTAATACAAATAAT
TTTTT
Length of 3' end seq. 595
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -