NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH223
Library SL
(Link to library)
Clone ID SLH223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID SLH223Z
(Link to Original site)
Representative DNA sequence 
>SLH223 (SLH223Q) /CSM/SL/SLH2-A/SLH223Q.Seq.d/
XXXXXXXXXXTTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTA
TGAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTG
TTTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCAT
TTCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATT
AGAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGT
TCCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTATCTGGTTATGATGA
TTCAAATAGTGATATTATTAGAGTTCAATCAATTTCACTTTCAAATTAAAAAAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---SSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTLNINILGFKEIIS
NTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNEFYAITLSGYDDS
NSDIIRVQSISLSN*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---sqvqvgvhiqrrrlnimkldqylemfyslnvqldpivyqvkakepststf*vlkksf
qilklts*pkvkkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiemnsmlllylvmmi
qivillefnqfhfqikk


Frame B:
---lkcklgsifkegg*il*n*tntwkcfil*mcnwiqlfik*rqknpqhqhfrf*rnhf
kyss*plnqr*knstlnfirtih*fiiy**w*fiqyn*rstskil*k*ilcyysiwl**f
k**yy*ssinftfklkk


Frame C:
---SSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTLNINILGFKEIIS
NTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNEFYAITLSGYDDS
NSDIIRVQSISLSN*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH223 (SLH223Q) /CSM/SL/SLH2-A/SLH223Q.Seq.d/                        787   0.0
SLH143 (SLH143Q) /CSM/SL/SLH1-B/SLH143Q.Seq.d/                        787   0.0
SLE641 (SLE641Q) /CSM/SL/SLE6-B/SLE641Q.Seq.d/                        787   0.0
SLG156 (SLG156Q) /CSM/SL/SLG1-C/SLG156Q.Seq.d/                        779   0.0
SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/                        761   0.0
SLE865 (SLE865Q) /CSM/SL/SLE8-C/SLE865Q.Seq.d/                        753   0.0
CFJ394 (CFJ394Q) /CSM/CF/CFJ3-D/CFJ394Q.Seq.d/                        741   0.0
CFF669 (CFF669Q) /CSM/CF/CFF6-C/CFF669Q.Seq.d/                        741   0.0
SFK688 (SFK688Q) /CSM/SF/SFK6-D/SFK688Q.Seq.d/                        731   0.0
SFB309 (SFB309Q) /CSM/SF/SFB3-A/SFB309Q.Seq.d/                        731   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039235) Dictyostelium discoideum slug cDNA, clone SLH223.      787   0.0    1
(AU039206) Dictyostelium discoideum slug cDNA, clone SLH143.      787   0.0    1
(AU034885) Dictyostelium discoideum slug cDNA, clone SLE641.      787   0.0    1
(AU039671) Dictyostelium discoideum slug cDNA, clone SLG156.      779   0.0    1
(AU039626) Dictyostelium discoideum slug cDNA, clone SLE865.      753   0.0    1
(BJ372438) Dictyostelium discoideum cDNA clone:ddc12i18, 3' ...   706   0.0    2
(BJ375770) Dictyostelium discoideum cDNA clone:ddc19l23, 3' ...   706   0.0    2
(AU039615) Dictyostelium discoideum slug cDNA, clone SLE843.      424   0.0    2
(BJ401345) Dictyostelium discoideum cDNA clone:dds22o22, 3' ...   706   0.0    2
(BJ376098) Dictyostelium discoideum cDNA clone:ddc21n04, 3' ...   688   0.0    2
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007213_9(AC007213|pid:none) Arabidopsis thaliana chromosome 2 ...    34   1.8
CP000025_1226(CP000025|pid:none) Campylobacter jejuni RM1221, co...    33   3.0
CP000814_1063(CP000814|pid:none) Campylobacter jejuni subsp. jej...    33   3.0
AM502231_112(AM502231|pid:none) Leishmania infantum chromosome 13.     33   4.0
AF332093_303(AF332093|pid:none) White spot syndrome virus, compl...    33   4.0
AF402998_1(AF402998|pid:none) White spot syndrome virus ORF1292 ...    33   4.0
AF108897_2(AF108897|pid:none) Campylobacter jejuni PglB (pglB) g...    32   5.2
X91081_1(X91081|pid:none) C.hyoilei rfbF and rfbP genes.               32   5.2
AF001498_2(AF001498|pid:none) Campylobacter jejuni polysaccharid...    32   5.2
AY144490_6(AY144490|pid:none) Salmonella enterica subsp. enteric...    32   8.8
protein update 2009. 1.24
PSORT 

 psg: 0.40  gvh: 0.55  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SLH223 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH223Z
3' end seq. 
>SLH223Z.Seq
----------TTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTA
TGAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTG
TTTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCAT
TTCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATT
AGAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGT
TCCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTATCTGGTTATGATGA
TTCAAATAGTGATATTATTAGAGTTCAATCAATTTCACTTTCAAATTAAAAAAA
Length of 3' end seq. 404
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -