SLH275
Library SL
(Link to library)
Clone ID SLH275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16280-1
Original site URL
Representative seq. ID SLH275Z
(Link to Original site)
Representative DNA sequence
>SLH275 (SLH275Q) /CSM/SL/SLH2-D/SLH275Q.Seq.d/
XXXXXXXXXXTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTACGAATTGGT
CGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCCACAAAGAGG
TCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGCTAGAGGTCT
CAAAGTTACTCCATTCACCGTTGAATTAATCTCATTCCGTGTACCAAGAAAATCTGATAT
CTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCACTGCCGAACA
ATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGGTTTTGTCAA
AAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCCAAAGAATGA
AAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTTAGAATCTGA
AATCGTTAAAAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAATTTTCATTC
TTAAATTGTATTA
sequence update 1998. 7. 2
Translated Amino Acid sequence
---YLAGKGDGNIRYYELVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLK
VTPFTVELISFRVPRKSDIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKK
ASAVEFKPVVQVQEGPKNEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN*innfhs*
ivl


Translated Amino Acid sequence (All Frames)
Frame A:
---ytllvkvmvtsdttnwsmnhhtfis*vnsnlpphkevfasyqrdvstplnvkslevs
kllhspln*shsvyqenlissktistqiptlvnhhslpnngfqvpmlnqrllv*lvvlsk
klqllnsnqsfkfkkvqrmkknsvkntkn*rfvllt*nlkslkrmpksknsptkliifil
kly


Frame B:
---ipcw*r*w*hqilrigr*itihsflk*iqichptkrsllltkemsqhl*m*nr*rsq
sysihr*inlipctkki*ylprrylprylrw*tithcrtmgfryqc*tkdc*fswwfcqk
sfsc*iqtsrsssrrske*krtp*rirkikdsccllri*nr*kgcqnqrthqln**fsfl
nci


Frame C:
---YLAGKGDGNIRYYELVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLK
VTPFTVELISFRVPRKSDIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKK
ASAVEFKPVVQVQEGPKNEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN*innfhs*
ivl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH275 (SLH275Q) /CSM/SL/SLH2-D/SLH275Q.Seq.d/ 1076 0.0
SLH850 (SLH850Q) /CSM/SL/SLH8-C/SLH850Q.Seq.d/ 1061 0.0
SLH247 (SLH247Q) /CSM/SL/SLH2-B/SLH247Q.Seq.d/ 1061 0.0
SLE542 (SLE542Q) /CSM/SL/SLE5-B/SLE542Q.Seq.d/ 1061 0.0
SLE465 (SLE465Q) /CSM/SL/SLE4-C/SLE465Q.Seq.d/ 1061 0.0
SLC573 (SLC573Q) /CSM/SL/SLC5-D/SLC573Q.Seq.d/ 1061 0.0
SLB113 (SLB113Q) /CSM/SL/SLB1-A/SLB113Q.Seq.d/ 1061 0.0
SLA487 (SLA487Q) /CSM/SL/SLA4-D/SLA487Q.Seq.d/ 1061 0.0
SLA132 (SLA132Q) /CSM/SL/SLA1-B/SLA132Q.Seq.d/ 1061 0.0
SLG861 (SLG861Q) /CSM/SL/SLG8-C/SLG861Q.Seq.d/ 1059 0.0

own update 2001. 8.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039249) Dictyostelium discoideum slug cDNA, clone SLH275. 1076 0.0 1
(AU052274) Dictyostelium discoideum slug cDNA, clone SLA487. 1061 0.0 1
(AU052156) Dictyostelium discoideum slug cDNA, clone SLA132. 1061 0.0 1
(AU039474) Dictyostelium discoideum slug cDNA, clone SLH850. 1061 0.0 1
(AU039242) Dictyostelium discoideum slug cDNA, clone SLH247. 1061 0.0 1
(AU034998) Dictyostelium discoideum slug cDNA, clone SLE465. 1061 0.0 1
(AU034819) Dictyostelium discoideum slug cDNA, clone SLE542. 1061 0.0 1
(AU034585) Dictyostelium discoideum slug cDNA, clone SLC573. 1061 0.0 1
(AU033508) Dictyostelium discoideum slug cDNA, clone SLB113. 1061 0.0 1
(AU284287) Dictyostelium discoideum gamete cDNA clone:FC-AI1... 1059 0.0 1
dna update 2009. 5.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

S18663(S18663) coronin - slime mold (Dictyostelium discoideum) ... 304 9e-82
AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ... 159 3e-38
(Q6QEF8) RecName: Full=Coronin-6; 137 2e-31
AF447884_1(AF447884|pid:none) Homo sapiens PP1782 mRNA, complete... 137 2e-31
AF447885_1(AF447885|pid:none) Homo sapiens PP1881 mRNA, complete... 137 2e-31
AK096431_1(AK096431|pid:none) Homo sapiens cDNA FLJ39112 fis, cl... 137 2e-31
AF140359_1(AF140359|pid:none) Rattus norvegicus coronin relative... 137 2e-31
(Q920J3) RecName: Full=Coronin-6; &BC098656_1(BC098656|pid:none) 137 2e-31
BC133331_1(BC133331|pid:none) Bos taurus coronin, actin binding ... 135 5e-31
AB070895_1(AB070895|pid:none) Mus musculus Coro6 mRNA for coroni... 135 7e-31
protein update 2009. 6. 4
PSORT

psg: 0.54 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SLH275 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH275Z
3' end seq.
>SLH275Z.Seq
----------TTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTACGAATTGGT
CGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCCACAAAGAGG
TCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGCTAGAGGTCT
CAAAGTTACTCCATTCACCGTTGAATTAATCTCATTCCGTGTACCAAGAAAATCTGATAT
CTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCACTGCCGAACA
ATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGGTTTTGTCAA
AAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCCAAAGAATGA
AAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTTAGAATCTGA
AATCGTTAAAAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAATTTTCATTC
TTAAATTGTATTA
Length of 3' end seq. 543
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -