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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ419
Library SL
(Link to library)
Clone ID SLJ419
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16453-1
Original site URL
Representative seq. ID SLJ419F
(Link to Original site)
Representative DNA sequence 
>SLJ419 (SLJ419Q) /CSM/SL/SLJ4-A/SLJ419Q.Seq.d/
CAAACTAAAAAAAAATAAATTATTAATTTTTAATTTTTTTTTTATTATTATTAAAATTTA
AATCACAAACGAAAGAAATAAAACATGTCCGCAAGTAATAAAGATGACCAACTCATGAAA
AATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGACAATATGGAGCTCCCA
AAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCCATCAGCCATCCAACAA
AGAGCTATCATTCCACTCTXXXXXXXXXX
sequence update 1999. 3. 8
Translated Amino Acid sequence 
qtkkk*iinf*fffyyy*nlnhkrkk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELP
KDLLRGIYSYGFEKPSAIQQRAIIPL---
Translated Amino Acid sequence (All Frames) 
Frame A:
qtkkk*iinf*fffyyy*nlnhkrkk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELP
KDLLRGIYSYGFEKPSAIQQRAIIPL---


Frame B:
klkknkllifnfffiiiki*itnernktcpqvikmtns*kmsskvpttklsihstiwssq
ris*evstpmvlkshqpsnkelsfh---


Frame C:
n*kkiny*fliffllllkfksqtkeikhvrk**r*pthek*vrkylrqncrfirqygapk
gslkrylllwf*kaishptksyhst---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ419 (SLJ419Q) /CSM/SL/SLJ4-A/SLJ419Q.Seq.d/                        454   e-127
CFJ345 (CFJ345Q) /CSM/CF/CFJ3-B/CFJ345Q.Seq.d/                        454   e-127
CFC566 (CFC566Q) /CSM/CF/CFC5-C/CFC566Q.Seq.d/                        454   e-127
SFG413 (SFG413Q) /CSM/SF/SFG4-A/SFG413Q.Seq.d/                        428   e-119
CHE485 (CHE485Q) /CSM/CH/CHE4-D/CHE485Q.Seq.d/                        428   e-119
CFF657 (CFF657Q) /CSM/CF/CFF6-C/CFF657Q.Seq.d/                        428   e-119
SFH316 (SFH316Q) /CSM/SF/SFH3-A/SFH316Q.Seq.d/                        422   e-117
CFC326 (CFC326Q) /CSM/CF/CFC3-B/CFC326Q.Seq.d/                        422   e-117
AFG226 (AFG226Q) /CSM/AF/AFG2-B/AFG226Q.Seq.d/                        422   e-117
SFA766 (SFA766Q) /CSM/SF/SFA7-C/SFA766Q.Seq.d/                        418   e-116
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds.   349  1e-92  1
AL641549|AL641549.1 Xenopus tropicalis EST, clone TNeu012b10 5'.    62  4e-06  1
AL674903|AL674903.1 Xenopus tropicalis EST, clone TGas065k02 5'.    62  4e-06  1
AL785077|AL785077.1 Xenopus tropicalis EST, clone TNeu089l05 5'.    62  4e-06  1
AV078619|AV078619.1 Mus musculus adult male stomach cDNA, partial sequence, clone 2210405D05.    62  4e-06  1
BY354389|BY354389.1 Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810035H13, 3' end partial sequence.    62  4e-06  1
CB367289|CB367289.1 E38 early-oocyst library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone E38 similar to Plasmodium berghei RNA helicase-1, mRNA sequence.    58  5e-05  1
CB367287|CB367287.1 E830 early-oocyst library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone E830 similar to Plasmodium berghei RNA helicase-1, mRNA sequence.    58  5e-05  1
CB367290|CB367290.1 E54 early-oocyst library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone E54 similar to Plasmodium berghei RNA helicase-1, mRNA sequence.    58  5e-05  1
CB367288|CB367288.1 E3015 early-oocyst library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone E3015 similar to Plasmodium berghei RNA helicase-1, mRNA sequence.    58  5e-05  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...   118   5e-26
(A1D7N3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    75   9e-13
AM920435_674(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    72   4e-12
(Q4WX43) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    72   6e-12
(P47943) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    72   6e-12
(A7EGL7) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    72   6e-12
(A6RJ45) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    72   6e-12
(Q1DQ20) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    72   8e-12
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    71   1e-11
(A4QVP2) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    70   2e-11
protein update 2009. 6. 6
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for SLJ419 is nuc
5' end seq. ID SLJ419F
5' end seq. 
>SLJ419F.Seq
CAAACTAAAAAAAAATAAATTATTAATTTTTAATTTTTTTTTTATTATTATTAAAATTTA
AATCACAAACGAAAGAAATAAAACATGTCCGCAAGTAATAAAGATGACCAACTCATGAAA
AATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGACAATATGGAGCTCCCA
AAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCCATCAGCCATCCAACAA
AGAGCTATCATTCCACTCT----------
Length of 5' end seq. 259
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -