>SLJ826 (SLJ826Q) /CSM/SL/SLJ8-B/SLJ826Q.Seq.d/
CCCACGCGTCCGGAGATCTGCAACCAAATTAATTAAAAACGTAAACATCAATAGATGTGT
TCAATCAAATGTTGTTAGATCAACTAGTAGATTAATTAATAATAACAGTATCAACACTGT
TAGACAATTTACTTCATCATCATCCTCATCATTCACTTCATTATTCAACAATAATAATGT
GAATAATACAAATATTAAATATCAACGTTTTTACTCATCTGCAAATGATGTAGTTATTAA
AGTACCATCAATGGGTGACTCTATTTXXXXXXXXXXAGACCAATCATGTATTTAGCTCTT
ACCTATGATCACAGAATTATCGATGGTAGAGAAGCCGTAACTTTCTTAAAGAAAATTAAA
GATGTTCTCGAAAATCCAGAAAGAATTTTATTAGAATTATAAATTAAAAATAAAATTTAA
AAATAAAATAAAAAAAAAAAAAAGAAAAAAC

PRVRRSATKLIKNVNINRCVQSNVVRSTSRLINNNSINTVRQFTSSSSSSFTSLFNNNNV
NNTNIKYQRFYSSANDVVIKVPSMGDSI---

---RPIMYLALTYDHRIIDGREAVTFLKKIKDVLENPERILLEL*iknki*k*nkkkkkk
k

Frame A:
ptrpeicnqin*krkhq*mcsikcc*in**in***qyqhc*tiyfiiiliihfiiqq**c
e*yky*istfllick*csy*sting*ly---

---RPIMYLALTYDHRIIDGREAVTFLKKIKDVLENPERILLEL*iknki*k*nkkkkkk
k

Frame B:
PRVRRSATKLIKNVNINRCVQSNVVRSTSRLINNNSINTVRQFTSSSSSSFTSLFNNNNV
NNTNIKYQRFYSSANDVVIKVPSMGDSI---

---dqsci*llpmitelsmvekp*ls*rklkmfskiqkefy*nyklkikfknkikkkkrk
n

Frame C:
hasgdlqpn*lkt*tsidvfnqmlldqlvd*liitvstlldnllhhhphhslhystiim*
iiqilninvfthlqmm*llkyhqwvtlf---

---tnhvfssyl*sqnyrw*rsrnflken*rcsrksrknfiriin*k*nlkik*kkkkek

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ826 (SLJ826Q) /CSM/SL/SLJ8-B/SLJ826Q.Seq.d/                        733   0.0
VFM575 (VFM575Q) /CSM/VF/VFM5-D/VFM575Q.Seq.d/                        504   e-142
VFK728 (VFK728Q) /CSM/VF/VFK7-B/VFK728Q.Seq.d/                        504   e-142
VFK553 (VFK553Q) /CSM/VF/VFK5-C/VFK553Q.Seq.d/                        504   e-142
VFG821 (VFG821Q) /CSM/VF/VFG8-A/VFG821Q.Seq.d/                        504   e-142
VFG423 (VFG423Q) /CSM/VF/VFG4-A/VFG423Q.Seq.d/                        504   e-142
VFE243 (VFE243Q) /CSM/VF/VFE2-B/VFE243Q.Seq.d/                        504   e-142
SLC641 (SLC641Q) /CSM/SL/SLC6-B/SLC641Q.Seq.d/                        504   e-142
SLB540 (SLB540Q) /CSM/SL/SLB5-B/SLB540Q.Seq.d/                        504   e-142
SFJ701 (SFJ701Q) /CSM/SF/SFJ7-A/SFJ701Q.Seq.d/                        504   e-142

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   504  0.0  2
AL439221|AL439221.1 T3 end of clone BD0AA003C04 of library BD0AA from strain CBS 94 of  Candida tropicalis.    56  1e-04  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  0.005  9
BE055467|BE055467.2 GA__Ea0033B22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0033B22f, mRNA sequence.    50  0.023  1
CB290319|CB290319.1 UCRCS01_01ag06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag06, mRNA sequence.    50  0.023  1
BQ401795|BQ401795.1 GA__Ed0045G03f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0045G03f, mRNA sequence.    50  0.023  1
BQ402061|BQ402061.1 GA__Ed0047D08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0047D08f, mRNA sequence.    50  0.023  1
CB290210|CB290210.1 UCRCS01_01aa11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa11, mRNA sequence.    50  0.023  1
AU300590|AU300590.1 Citrus unshiu mRNA, clone: MAPF109, 5' end, expressed in albedo.    50  0.023  1
BM359325|BM359325.1 GA__Ea0018N23r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0018N23r, mRNA sequence.    50  0.023  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000390_3365(CP000390|pid:none) Mesorhizobium sp. BNC1, complet...    65   6e-10
CP000613_2211(CP000613|pid:none) Rhodospirillum centenum SW, com...    65   9e-10
AE017221_1693(AE017221|pid:none) Thermus thermophilus HB27, comp...    64   1e-09
AP008226_288(AP008226|pid:none) Thermus thermophilus HB8 genomic...    64   1e-09
EU952950_1(EU952950|pid:none) Zea mays clone 1369708 dihydrolipo...    64   2e-09
EU963730_1(EU963730|pid:none) Zea mays clone 272243 dihydrolipoy...    64   2e-09
CP000237_528(CP000237|pid:none) Neorickettsia sennetsu strain Mi...    64   2e-09
AJ223803_1(AJ223803|pid:none) Arabidopsis thaliana mRNA for 2-ox...    64   2e-09
AB010071_2(AB010071|pid:none) Arabidopsis thaliana genomic DNA, ...    64   2e-09
EF148587_1(EF148587|pid:none) Populus trichocarpa x Populus delt...    63   3e-09

 psg: 0.63  gvh: 0.44  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.86  mip: 0.12
 nuc: 0.06  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SLJ826 is mit

>SLJ826F.Seq
CCCACGCGTCCGGAGATCTGCAACCAAATTAATTAAAAACGTAAACATCAATAGATGTGT
TCAATCAAATGTTGTTAGATCAACTAGTAGATTAATTAATAATAACAGTATCAACACTGT
TAGACAATTTACTTCATCATCATCCTCATCATTCACTTCATTATTCAACAATAATAATGT
GAATAATACAAATATTAAATATCAACGTTTTTACTCATCTGCAAATGATGTAGTTATTAA
AGTACCATCAATGGGTGACTCTATTT----------

>SLJ826Z.Seq
----------AGACCAATCATGTATTTAGCTCTTACCTATGATCACAGAATTATCGATGG
TAGAGAAGCCGTAACTTTCTTAAAGAAAATTAAAGATGTTCTCGAAAATCCAGAAAGAAT
TTTATTAGAATTATAAATTAAAAATAAAATTTAAAAATAAAATAAAAAAAAAAAAAAGAA
AAAAC

>SLJ826P.Seq
CCCACGCGTCCGGAGATCTGCAACCAAATTAATTAAAAACGTAAACATCAATAGATGTGT
TCAATCAAATGTTGTTAGATCAACTAGTAGATTAATTAATAATAACAGTATCAACACTGT
TAGACAATTTACTTCATCATCATCCTCATCATTCACTTCATTATTCAACAATAATAATGT
GAATAATACAAATATTAAATATCAACGTTTTTACTCATCTGCAAATGATGTAGTTATTAA
AGTACCATCAATGGGTGACTCTATTT----------AGACCAATCATGTATTTAGCTCTT
ACCTATGATCACAGAATTATCGATGGTAGAGAAGCCGTAACTTTCTTAAAGAAAATTAAA
GATGTTCTCGAAAATCCAGAAAGAATTTTATTAGAATTATAAATTAAAAATAAAATTTAA
AAATAAAATAAAAAAAAAAAAAAGAAAAAAC