>SSB322 (SSB322Q) /CSM/SS/SSB3-A/SSB322Q.Seq.d/
XXXXXXXXXXATTCAAGCTCAAGAAGTTGAGTTAAAAACTGGTGAAGAAGATGAAACTAC
TTTATGTTTTACTAAAGGTAAATNATATATTTTACAAGATAAACAATATAAAGAAAGAGG
TGTTGGTACAATTAGAGTTAATAAAGATTTAGAAGAAAAGTNTAGAATAATTATGAATGC
TGATGGTTCAAAGAAAAATATTTTAAATGTAAACATTTTCCCAAAAATGAAAGTAACCTC
ACCAAATGAAAAAACTTTAACATTCATTGCATTTGAAGATGATAAAATTTGCACTTTTGT
TTTAATTGCAAAACCAGAAGAAATTAAAAACTTTTCAACTGTTATAAATAAACAAATCAG
TAGCCTCGAAGTAGCTTAAAATTTTATTTTAAAAAAAAAAAAA

---QAQEVELKTGEEDETTLCFTKGKXYILQDKQYKERGVGTIRVNKDLEEKXRIIMNAD
GSKKNILNVNIFPKMKVTSPNEKTLTFIAFEDDKICTFVLIAKPEEIKNFSTVINKQISS
LEVA*nfilkkkk

Frame A:
---fklkkls*klvkkmkllyvllkvnxifykinnikkevlvqleliki*kksxe*l*ml
mvqrkif*m*tfsqk*k*phqmkkl*hslhlkmikfallf*lqnqkklktfqll*inksv
ask*lkilf*kkk


Frame B:
---sssrs*vknw*rr*nyfmfy*r*xiyftr*ti*rkrcwyn*s**rfrrkv*nnyec*
wfkekyfkckhfpknesnltk*knfnihci*r**nlhfcfncktrrn*klfncyk*tnq*
prsslkfyfkkkk


Frame C:
---QAQEVELKTGEEDETTLCFTKGKXYILQDKQYKERGVGTIRVNKDLEEKXRIIMNAD
GSKKNILNVNIFPKMKVTSPNEKTLTFIAFEDDKICTFVLIAKPEEIKNFSTVINKQISS
LEVA*nfilkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB322 (SSB322Q) /CSM/SS/SSB3-A/SSB322Q.Seq.d/                        741   0.0
VSB874 (VSB874Q) /CSM/VS/VSB8-D/VSB874Q.Seq.d/                        733   0.0
SSK843 (SSK843Q) /CSM/SS/SSK8-B/SSK843Q.Seq.d/                        733   0.0
VFE453 (VFE453Q) /CSM/VF/VFE4-C/VFE453Q.Seq.d/                        722   0.0
SFF168 (SFF168Q) /CSM/SF/SFF1-C/SFF168Q.Seq.d/                        232   3e-60
VHJ819 (VHJ819Q) /CSM/VH/VHJ8-A/VHJ819Q.Seq.d/                         42   0.006
VHD423 (VHD423Q) /CSM/VH/VHD4-A/VHD423Q.Seq.d/                         42   0.006
SLA176 (SLA176Q) /CSM/SL/SLA1-D/SLA176Q.Seq.d/                         42   0.006
SHA853 (SHA853Q) /CSM/SH/SHA8-C/SHA853Q.Seq.d/                         42   0.006
FC-AD09 (FC-AD09Q) /CSM/FC/FC-AD/FC-AD09Q.Seq.d/                       42   0.006

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           40  3e-04  11
AC120826|AC120826.5 Rattus norvegicus clone CH230-495G14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  0.001  6
AC106458|AC106458.4 Rattus norvegicus clone CH230-206K14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.003  10
AC114703|AC114703.4 Rattus norvegicus clone CH230-125E17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.003  8
AC111264|AC111264.4 Rattus norvegicus clone CH230-40G1, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.004  7
BX005211|BX005211.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-128A7.    40  0.005  5
AC112026|AC112026.4 Rattus norvegicus 19 BAC CH230-105L11 (Children's Hospital Oakland Research Institute) complete sequence.    36  0.005  7
AL831733|AL831733.4 Mouse DNA sequence from clone RP23-109O11 on chromosome 4.    36  0.005  5
AC098759|AC098759.5 Rattus norvegicus clone CH230-167F9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  0.008  5
AC127095|AC127095.3 Rattus norvegicus clone CH230-75F6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  0.008  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB099485_1(AB099485|pid:none) Mizuhopecten yessoensis canbp75 mR...    70   3e-11
AM438365_2(AM438365|pid:none) Vitis vinifera contig VV78X052512....    64   1e-09
AY140094_1(AY140094|pid:none) Arabidopsis thaliana unknown prote...    61   1e-08
BC055272_1(BC055272|pid:none) Danio rerio zgc:63485, mRNA (cDNA ...    56   4e-07
AB012247_1(AB012247|pid:none) Arabidopsis thaliana genomic DNA, ...    56   4e-07
BC059200_1(BC059200|pid:none) Danio rerio zgc:66385, mRNA (cDNA ...    56   4e-07
AY084443_1(AY084443|pid:none) Arabidopsis thaliana clone 108414 ...    55   6e-07
EF085180_1(EF085180|pid:none) Picea sitchensis clone WS0293_E15 ...    55   8e-07
AM270002_4(AM270002|pid:none) Aspergillus niger contig An02c0070...    55   1e-06
CR380959_548(CR380959|pid:none) Candida glabrata strain CBS138 c...    54   2e-06

 psg: 0.75  gvh: 0.21  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSB322 is nuc

>SSB322Z.Seq
----------ATTCAAGCTCAAGAAGTTGAGTTAAAAACTGGTGAAGAAGATGAAACTAC
TTTATGTTTTACTAAAGGTAAATNATATATTTTACAAGATAAACAATATAAAGAAAGAGG
TGTTGGTACAATTAGAGTTAATAAAGATTTAGAAGAAAAGTNTAGAATAATTATGAATGC
TGATGGTTCAAAGAAAAATATTTTAAATGTAAACATTTTCCCAAAAATGAAAGTAACCTC
ACCAAATGAAAAAACTTTAACATTCATTGCATTTGAAGATGATAAAATTTGCACTTTTGT
TTTAATTGCAAAACCAGAAGAAATTAAAAACTTTTCAACTGTTATAAATAAACAAATCAG
TAGCCTCGAAGTAGCTTAAAATTTTATTTTAAAAAAAAAAAAA