SSB539
Library SS
(Link to library)
Clone ID SSB539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SSB539Z
(Link to Original site)
Representative DNA sequence
>SSB539 (SSB539Q) /CSM/SS/SSB5-B/SSB539Q.Seq.d/
XXXXXXXXXXTTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTG
CCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAGACTGTAATGG
CTGGGTACATCGTTAGTANTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAAT
TTTATATTGGTGGTGTATTTGATATTCCATGTGATCCAAATTCACTTGATCATGGTATTT
TAATTGTTGGTTACTNTGCTAAAAATACAATTTTCCGTNAAAATATGCCATATTGGATTG
TAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAA
AGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAAT
ATTTAGTTTAGAAA
sequence update 1997. 9. 5
Translated Amino Acid sequence
---SYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSXGPLAIAADAVEWQF
YIGGVFDIPCDPNSLDHGILIVGYXAKNTIFRXNMPYWIVKNSWGADWGEQGYIYLRRGK
NTCGVSNFVSTSII*iytkylv*k


Translated Amino Acid sequence (All Frames)
Frame A:
---SYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSXGPLAIAADAVEWQF
YIGGVFDIPCDPNSLDHGILIVGYXAKNTIFRXNMPYWIVKNSWGADWGEQGYIYLRRGK
NTCGVSNFVSTSII*iytkylv*k


Frame B:
---hiltllkqvhnvtltlpilvqrfpilq*sqrmrl*wlgtslvxdhsqlllmllsgnf
ilvvylifhviqihlimvf*llvtxlkiqfsvkichigl*rilgvqigenkdtfi*eeer
ihvvyqtlfqlv*fkfipni*fr


Frame C:
---islhc*nrytm*l*lcqywckdfqfyndpke*dcngwvhr*xwttrncc*cc*vail
ywwci*ysm*skft*swyfncwllc*kynfpxkyaildckeflgcrlgrtrihlfkkrke
ymwciklcfn*ynlnlyqifsle


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSB539 (SSB539Q) /CSM/SS/SSB5-B/SSB539Q.Seq.d/ 823 0.0
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/ 807 0.0
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/ 807 0.0
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/ 807 0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/ 807 0.0
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/ 807 0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/ 807 0.0
SSE437 (SSE437Q) /CSM/SS/SSE4-B/SSE437Q.Seq.d/ 807 0.0
SSE172 (SSE172Q) /CSM/SS/SSE1-C/SSE172Q.Seq.d/ 807 0.0
SLI528 (SLI528Q) /CSM/SL/SLI5-B/SLI528Q.Seq.d/ 807 0.0

own update 2001. 7. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 807 0.0 1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep. 222 3e-56 2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H. 222 3e-56 2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY. 222 3e-56 2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG. 222 3e-56 2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C. 222 3e-56 2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC. 222 3e-56 2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence. 222 3e-56 2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 222 3e-56 2
AJ510166|AJ510166.1 Cloning vector pDXA-GST. 222 3e-56 2
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 270 1e-71
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)... 136 2e-31
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183... 132 4e-30
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080... 131 6e-30
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot... 131 6e-30
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ... 124 1e-27
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot... 124 1e-27
EF538806_1(EF538806|pid:none) Trypanoplasma borreli cathepsin L ... 123 2e-27
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ... 123 2e-27
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ... 122 5e-27
protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.55 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for SSB539 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB539Z
3' end seq.
>SSB539Z.Seq
----------TTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTG
CCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAGACTGTAATGG
CTGGGTACATCGTTAGTANTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAAT
TTTATATTGGTGGTGTATTTGATATTCCATGTGATCCAAATTCACTTGATCATGGTATTT
TAATTGTTGGTTACTNTGCTAAAAATACAATTTTCCGTNAAAATATGCCATATTGGATTG
TAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAA
AGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAAT
ATTTAGTTTAGAAA
Length of 3' end seq. 424
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -