>SSC836 (SSC836Q) /CSM/SS/SSC8-B/SSC836Q.Seq.d/
CAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGT
GGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAA
GAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTT
CCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAATTGAAAGATTATCACCT
TTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAA
ACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCA
GGTAATCCAACAAATTAATTAAATAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAAT
AAAAAAAAAATATTTCAAACAAAAGTAATAAAATTAAATCAATAATTAAAAAAATAAATA
AATAAAAGTATATTTTAAAAAT

QDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNEEARSLLV
PPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQTTKGFNIGGQP
GNPTN*lnnnnkkrkk*kknkkkifqtkviklnq*lkk*inksif*k

Frame A:
QDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNEEARSLLV
PPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQTTKGFNIGGQP
GNPTN*lnnnnkkrkk*kknkkkifqtkviklnq*lkk*inksif*k


Frame B:
kiskielnglknqlwlqfvvvnsvqieplksmlnkfgvlkngrdqvqfqfqmkklvly*f
hhhlvhqmismlsqlkdyhl*lllnkllllhyllslvvikpttl*nqnklqkvlilvvnq
viqqin*iiiikkeknkkkikkkyfkqk**n*inn*knk*ikvyfkn


Frame C:
rfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk*rssffiss
ttiwftk*yqcyln*kiitfnfc*tnfcfsiicylww**nqqhfktktnykrf*ywwstr
*snklik****kkkkikkk*kknisnksnkiksiikkink*kyilk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE676 (SSE676Q) /CSM/SS/SSE6-D/SSE676Q.Seq.d/                        779   0.0
SSC836 (SSC836Q) /CSM/SS/SSC8-B/SSC836Q.Seq.d/                        779   0.0
SLE102 (SLE102Q) /CSM/SL/SLE1-A/SLE102Q.Seq.d/                        779   0.0
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/                        779   0.0
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/                        779   0.0
CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/                        779   0.0
AHM406 (AHM406Q) /CSM/AH/AHM4-A/AHM406Q.Seq.d/                        779   0.0
AHB359 (AHB359Q) /CSM/AH/AHB3-C/AHB359Q.Seq.d/                        779   0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/                        777   0.0
AFE476 (AFE476Q) /CSM/AF/AFE4-D/AFE476Q.Seq.d/                        773   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   779  0.0  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42  0.011  7
BE470067|BE470067.1 IpHdk03092 Head kidney cDNA library Ictalurus punctatus cDNA 5' similar to Dual specificity phosphatase 10 (DUSP10), mRNA sequence.    50  0.026  1
AJ226749|AJ226749.1 Ciona intestinalis genomic fragment, clone 19H7.    50  0.026  1
AX251513|AX251513.1 Sequence 481 from Patent WO0168912.           48  0.10  1
AC106668|AC106668.4 Rattus norvegicus clone CH230-101D9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    46  0.41  1
BE021617|BE021617.1 sm60c03.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-8285 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46  0.41  1
AC111639|AC111639.4 Rattus norvegicus clone CH230-100I8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.41  1
AW620673|AW620673.1 sj08c01.y1 Gm-c1032 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1032-1273 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46  0.41  1
BI971157|BI971157.1 GM830012B10F11 Gm-r1083 Glycine max cDNA clone Gm-r1083-4509 3', mRNA sequence.    46  0.41  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    62   8e-09
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    61   2e-08
CP000382_94(CP000382|pid:none) Clostridium novyi NT, complete ge...    59   7e-08
U64844_2(U64844|pid:none) Caenorhabditis elegans cosmid T22F3, c...    58   1e-07
U64844_1(U64844|pid:none) Caenorhabditis elegans cosmid T22F3, c...    58   1e-07
CP001330_331(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    58   1e-07
AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos...    55   9e-07
CP001032_4025(CP001032|pid:none) Opitutus terrae PB90-1, complet...    55   9e-07
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...    55   1e-06
BX538351_58(BX538351|pid:none) Cryptosporidium parvum chromosome...    54   2e-06

 psg: 0.81  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSC836 is cyt

>SSC836E.Seq
CAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGT
GGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAA
GAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTT
CCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAATTGAAAGATTATCACCT
TTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAA
ACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCA
GGTAATCCAACAAATTAATTAAATAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAAT
AAAAAAAAAATATTTCAAACAAAAGTAATAAAATTAAATCAATAATTAAAAAAATAAATA
AATAAAAGTATATTTTAAAAAT