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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SSE107
Library SS
(Link to library)
Clone ID SSE107
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09354-1
Original site URL
Representative seq. ID SSE107P
(Link to Original site)
Representative DNA sequence 
>SSE107 (SSE107Q) /CSM/SS/SSE1-A/SSE107Q.Seq.d/
ATTAATTTTTGTATTCACAAATATTAAAAAAAATAATTAAACAACAATAATAATTTAATT
TTAGCACTTCATTAATTTGTTTGTAAAAAAAAAAAAAAAAAAAAATTAAATTTTTATTGT
TTTTTTTAATTGTTTTTTTTTTATTGTTTTTTTTTTTANGGAACTCTGTTTTTTATTTGT
TATTTTTTTTTTTTTTTTTXXXXXXXXXXCCCCNTTTTTAATTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
*flysqilkkiikqq**fnfstslicl*KKKKKKIKFLLFFLIVFFLLFFFLXNSVFYLL
FFFFF---

---PXFNFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
infcihky*kk*lnnnnnlilalh*fvckkkkkkklnfycff*lfffycfffxgtlffic
yfffff---

---pxf*f*kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame B:
lifvftnikknn*ttiii*f*hfinlfvkkkkkkn*ifivffncfffivfffxelcflfv
ifffff---

---PXFNFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame C:
*flysqilkkiikqq**fnfstslicl*KKKKKKIKFLLFFLIVFFLLFFFLXNSVFYLL
FFFFF---

---pflilkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE107 (SSE107Q) /CSM/SS/SSE1-A/SSE107Q.Seq.d/                        119   3e-26
VHQ390 (VHQ390Q) /CSM/VH/VHQ3-D/VHQ390Q.Seq.d/                         38   0.082
VHP836 (VHP836Q) /CSM/VH/VHP8-B/VHP836Q.Seq.d/                         38   0.082
VHP728 (VHP728Q) /CSM/VH/VHP7-B/VHP728Q.Seq.d/                         38   0.082
VHP547 (VHP547Q) /CSM/VH/VHP5-B/VHP547Q.Seq.d/                         38   0.082
VHO692 (VHO692Q) /CSM/VH/VHO6-D/VHO692Q.Seq.d/                         38   0.082
VHO624 (VHO624Q) /CSM/VH/VHO6-A/VHO624Q.Seq.d/                         38   0.082
VHO357 (VHO357Q) /CSM/VH/VHO3-C/VHO357Q.Seq.d/                         38   0.082
VHO338 (VHO338Q) /CSM/VH/VHO3-B/VHO338Q.Seq.d/                         38   0.082
VHO115 (VHO115Q) /CSM/VH/VHO1-A/VHO115Q.Seq.d/                         38   0.082
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CC275101|CC275101.1 CH261-90K14_RM1.1 CH261 Gallus gallus genomic clone CH261-90K14, DNA sequence.    46  0.27  1
AL663078|AL663078.8 Mouse DNA sequence from clone RP23-440P13 on chromosome 11.    44  1.1  1
BB619736|BB619736.1 Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830408H12, 5' end partial sequence.    44  1.1  1
BB250491|BB250491.2 Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730041I19, 3' end partial sequence.    44  1.1  1
BI988660|BI988660.1 4013-81 Mouse E14.5 retina lambda ZAP II Library Mus musculus cDNA, mRNA sequence.    44  1.1  1
CA572292|CA572292.1 K0532H04-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) cDNA Library (Long) Mus musculus cDNA clone NIA:K0532H04 IMAGE:30066999 5', mRNA sequence.    44  1.1  1
AL845357|AL845357.6 Zebrafish DNA sequence from clone DKEY-202M22 in linkage group 20.    44  1.1  1
BB581148|BB581148.1 Mus musculus 15 days embryo embryonic body below diaphragm cDNA, RIKEN full-length enriched library, clone:8230402M09, 5' end partial sequence.    44  1.1  1
CA570682|CA570682.1 K0509E06-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1+) cDNA Library (Long) Mus musculus cDNA clone NIA:K0509E06 IMAGE:30064757 5', mRNA sequence.    44  1.1  1
AX348882|AX348882.1 Sequence 340 from Patent WO0202807.           36  2.6  3
dna update 2003. 7.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 74,698,058
protein update 2009. 6.10
PSORT 

 psg: 1.03  gvh: 0.76  alm: 0.42  top: 1.00  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 4.20  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSE107 is nuc
5' end seq. ID SSE107F
5' end seq. 
>SSE107F.Seq
ATTAATTTTTGTATTCACAAATATTAAAAAAAATAATTAAACAACAATAATAATTTAATT
TTAGCACTTCATTAATTTGTTTGTAAAAAAAAAAAAAAAAAAAAATTAAATTTTTATTGT
TTTTTTTAATTGTTTTTTTTTTATTGTTTTTTTTTTTANGGAACTCTGTTTTTTATTTGT
TATTTTTTTTTTTTTTTTT----------
Length of 5' end seq. 199
3' end seq. ID SSE107Z
3' end seq. 
>SSE107Z.Seq
----------CCCCNTTTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
Length of 3' end seq. 128
Connected seq. ID SSE107P
Connected seq. 
>SSE107P.Seq
ATTAATTTTTGTATTCACAAATATTAAAAAAAATAATTAAACAACAATAATAATTTAATT
TTAGCACTTCATTAATTTGTTTGTAAAAAAAAAAAAAAAAAAAAATTAAATTTTTATTGT
TTTTTTTAATTGTTTTTTTTTTATTGTTTTTTTTTTTANGGAACTCTGTTTTTTATTTGT
TATTTTTTTTTTTTTTTTT----------CCCCNTTTTTAATTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -