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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE156
Library SS
(Link to library)
Clone ID SSE156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SSE156E
(Link to Original site)
Representative DNA sequence 
>SSE156 (SSE156Q) /CSM/SS/SSE1-C/SSE156Q.Seq.d/
AAATGGGTATGCCAGGTTATATTCCACCACCTGTAGGTGTAGTTCCAATGCCACAAATGG
GTATGCCAGGATGTCCACCAATGGTAGTTCCAATGCAACCACTTCCAGGACAATACCCAA
TGGGTGCTCCTTATCCATACAGTGGAGGCTATGGCTATGGTTATCGTGGTCACAAATTTA
AGAAATTTAAAGGTTATAAAGGTTTCAAAAAAGGATACTATCGTTATTAGAATAATTAAA
ACTCTACTTTTTTTGTAAACATATTAATTCCTTTTTTTTTTTTTTTTACATTTTCAAAAC
TTCAAAACTAAAATAAATTGTAAATTAACTTTATATGACTCTTAAACTAAAAAAACTAGT
TCTAGATCGCGAGCGGCCGCCACCGCGGTGGAGCTCCAATTC
sequence update 1998. 5. 2
Translated Amino Acid sequence 
MGMPGYIPPPVGVVPMPQMGMPGCPPMVVPMQPLPGQYPMGAPYPYSGGYGYGYRGHKFK
KFKGYKGFKKGYYRY*nn*nstffvnilipffffftfsklqn*nkl*infi*lln*kn*f
*iasgrhrggapi
Translated Amino Acid sequence (All Frames) 
Frame A:
kwvcqvifhhl*v*fqchkwvcqdvhqw*fqcnhfqdntqwvllihtveamamvivvtnl
rnlkvikvskkdtiviriiktllfl*ty*flfffflhfqnfktkinckltlyds*tkkts
srsraaatavelqf


Frame B:
ngyarlysttcrcssnatngyarmstngssnattsrtipngcslsiqwrlwlwlswsqi*
ei*rl*rfqkrilslle*lklyffckhinsfffffyifktsklk*ivn*lymtlklkklv
ldrerppprwssn


Frame C:
MGMPGYIPPPVGVVPMPQMGMPGCPPMVVPMQPLPGQYPMGAPYPYSGGYGYGYRGHKFK
KFKGYKGFKKGYYRY*nn*nstffvnilipffffftfsklqn*nkl*infi*lln*kn*f
*iasgrhrggapi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB417 (VSB417Q) /CSM/VS/VSB4-A/VSB417Q.Seq.d/                        496   e-139
SSK582 (SSK582Q) /CSM/SS/SSK5-D/SSK582Q.Seq.d/                        496   e-139
SSG307 (SSG307Q) /CSM/SS/SSG3-A/SSG307Q.Seq.d/                        496   e-139
SSE772 (SSE772Q) /CSM/SS/SSE7-C/SSE772Q.Seq.d/                        496   e-139
SSE156 (SSE156Q) /CSM/SS/SSE1-C/SSE156Q.Seq.d/                        496   e-139
SSA178 (SSA178Q) /CSM/SS/SSA1-D/SSA178Q.Seq.d/                        496   e-139
SSB688 (SSB688Q) /CSM/SS/SSB6-D/SSB688Q.Seq.d/                        482   e-135
SSM139 (SSM139Q) /CSM/SS/SSM1-B/SSM139Q.Seq.d/                        440   e-123
SSC880 (SSC880Q) /CSM/SS/SSC8-D/SSC880Q.Seq.d/                        434   e-121
SSB570 (SSB570Q) /CSM/SS/SSB5-C/SSB570Q.Seq.d/                        432   e-120
own update 2000. 8.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM271975|BM271975.1 ig37e03.y1 HR85 islet Homo sapiens cDNA 5' similar to SW:TSP4_RAT P49744 THROMBOSPONDIN 4 PRECURSOR. ;, mRNA sequence.    86  4e-13  1
AU174533|AU174533.1 Oryza sativa cDNA, partial sequence (E70577_2A).    86  4e-13  1
AU197488|AU197488.1 Oryza sativa cDNA, partial sequence (S1179_1A).    86  4e-13  1
C22604|C22604.1 Rice cDNA, partial sequence (R2916_4Z).    80  2e-11  1
BZ571293|BZ571293.1 msh2_182.y1 msh Pseudomonas aeruginosa genomic clone msh2_182, DNA sequence.    56  5e-07  2
AL921237|AL921237.1 Danio rerio EST sequence, clone 092-H04-1.    64  1e-06  1
S71730|S71730.1 influenza virus hemagglutinin 5' epitope tag=fusion protein {frame 1, multiple cloning site} [Saccharomyces cerevisiae=yeast, cloning vector YCpIF15,16,17, Other Plasmid Synthetic Partial, 135 nt].    64  1e-06  1
AL922088|AL922088.1 Danio rerio EST sequence, clone 105-H12-1.    64  1e-06  1
S71728|S71728.1 truncated protein {frame 1, multiple cloning site} [Saccharomyces cerevisiae=yeast, cloning vector YCpIF1-12, Other Plasmid Synthetic Partial, 99 nt].    64  1e-06  1
G17161|G17161.1 human STS SHGC-13190 clone pG-6342.    64  1e-06  1
dna update 2003. 7.22
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 502,329,496
protein update 2009. 7. 6
PSORT 

 psg: 0.88  gvh: 0.30  alm: 0.47  top: 0.97  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSE156 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSE156E
Full length Seq. 
>SSE156E.Seq
AAATGGGTATGCCAGGTTATATTCCACCACCTGTAGGTGTAGTTCCAATGCCACAAATGG
GTATGCCAGGATGTCCACCAATGGTAGTTCCAATGCAACCACTTCCAGGACAATACCCAA
TGGGTGCTCCTTATCCATACAGTGGAGGCTATGGCTATGGTTATCGTGGTCACAAATTTA
AGAAATTTAAAGGTTATAAAGGTTTCAAAAAAGGATACTATCGTTATTAGAATAATTAAA
ACTCTACTTTTTTTGTAAACATATTAATTCCTTTTTTTTTTTTTTTTACATTTTCAAAAC
TTCAAAACTAAAATAAATTGTAAATTAACTTTATATGACTCTTAAACTAAAAAAACTAGT
TCTAGATCGCGAGCGGCCGCCACCGCGGTGGAGCTCCAATTC
Length of full length seq. 402