>SSF221 (SSF221Q) /CSM/SS/SSF2-A/SSF221Q.Seq.d/
TTTTTTTTTTTTTTTTTTTTTATCCTTTGCAAAGATTTAATTTTCTTATAAGGTTTTTTT
TTTATTTTTTTTTATTTTATTTTTTTTATTTTATTTTATTTTATTTTTTTTTATTTATTA
ATTTAAATTTATCTTTATGGTTTGAGTGCAGGTTGTTGTGTGACACCAAGAGCGTTAGTT
GTCATAAGAATACCGACAATAACAGCGTAAAGACCTAAGGCACCAGCGAAAATTTCAATA
ATAAGCATTTTAACAAAAAGTGATGGATTTTGAGCGTCACCCAATGCACAACCACTACCA
GCAATACCTACGCAAACACCTGAAAAAACATTACAAAGACCAACAGTGATACCGGCACCA
AACATCATGTAACCGGCCATATAATCGGAAGCTGGATCCCAAATATTTAAAAATTTATCG
ATTTTACCATTTAAAATAATAGCTAAAATAATACCATAAATAGCTACAGCTTCACAGAAA
ATAATACTAATAATATTTTTTGAACGAATTCTTGGTTCTTTAACGGCAGCACCCATAAGT
GATGATGCAGTGACCCAAATACCCCAAGCTGAACCAACAACTGATAAGGCTAATGAAAGG
CCAATACCAAGTGCAGCCCATGTTGATGGGGATATAGTTACAAGGAAATAAGTACCTTGA
TCATAATAGTTATTATXXXXXXXXXX

FFFFFFYPLQRFNFLIRFFFYFFLFYFFYFILFYFFLFINLNLSLWFECRLLCDTKSVSC
HKNTDNNSVKT*gtsenfnnkhfnkk*wilsvtqcttttsntyant*knitktnsdtgtk
hhvtghiigswipni*kfidfti*nns*nntinsysftenntnnif*tnswffngsthk*
*csdpntps*tnn**g**kantkcspc*wgysykeistliiivi---

Frame A:
fffffffilckdlifl*gfffiffyfiffilfyfiffylli*iylyglsagccvtpralv
viriptita*rpkapakisiisiltksdgf*aspnaqplpaiptqtpektlqrptvipap
nim*pai*seagsqifknlsilpfkiiakiip*iatasqkiiliifferilgsltaapis
ddavtqipqaepttdkanerpipsaahvdgdivtrk*vp*s**ll---


Frame B:
fffffflsfaki*fsykvfflfffilfflfyfilfffiy*fkfifmv*vqvvv*hqer*l
s*eyrq*qrkdlrhqrkfq**af*qkvmdferhpmhnhyqqylrkhlkkhykdqq*yrhq
tscnrpynrkldpkylkiyrfyhlk**lk*yhk*lqlhrk*y**yflneflvl*rqhp*v
mmq*pkypklnqqlirlmkgqyqvqpmlmgi*lqgnkyldhnsy---


Frame C:
FFFFFFYPLQRFNFLIRFFFYFFLFYFFYFILFYFFLFINLNLSLWFECRLLCDTKSVSC
HKNTDNNSVKT*gtsenfnnkhfnkk*wilsvtqcttttsntyant*knitktnsdtgtk
hhvtghiigswipni*kfidfti*nns*nntinsysftenntnnif*tnswffngsthk*
*csdpntps*tnn**g**kantkcspc*wgysykeistliiivi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD723 (VSD723Q) /CSM/VS/VSD7-A/VSD723Q.Seq.d/                       1066   0.0
SSJ840 (SSJ840Q) /CSM/SS/SSJ8-B/SSJ840Q.Seq.d/                       1066   0.0
SSJ541 (SSJ541Q) /CSM/SS/SSJ5-B/SSJ541Q.Seq.d/                       1066   0.0
SSF221 (SSF221Q) /CSM/SS/SSF2-A/SSF221Q.Seq.d/                       1066   0.0
SSA525 (SSA525Q) /CSM/SS/SSA5-B/SSA525Q.Seq.d/                       1066   0.0
SSA331 (SSA331Q) /CSM/SS/SSA3-B/SSA331Q.Seq.d/                       1066   0.0
SLD255 (SLD255Q) /CSM/SL/SLD2-C/SLD255Q.Seq.d/                       1066   0.0
FC-AN11 (FC-AN11Q) /CSM/FC/FC-AN/FC-AN11Q.Seq.d/                     1066   0.0
FC-239 (FC-239Q) /CSM/CG/CG-FC/FC-239Q.Seq.d/                        1066   0.0
SSA536 (SSA536Q) /CSM/SS/SSA5-B/SSA536Q.Seq.d/                       1045   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   359   0.0    7
AW773378|AW773378.1 rp06a10.y1 Kloek Brook Zeldia punctata SL1 Zeldia punctata cDNA 5' similar to WP:T01H3.1 CE03595 PROTEOLIPID PROTEIN PPA1 LIKE PROTEIN ;, mRNA sequence.    54   5e-07  2
CD146628|CD146628.1 MG1-0114T-L399-G07-U.B MG1-0114 Schistosoma mansoni cDNA clone MG1-0114T-L399-G07.B, mRNA sequence.    62   1e-05  1
BP188642|BP188642.1 Dugesia japonica cDNA, clone: 05069_HH, expressed in the head.    62   1e-05  1
CD080944|CD080944.1 MA3-9999U-M316-G01-U.G MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M316-G01.G, mRNA sequence.    62   1e-05  1
CB404143|CB404143.1 OSTR018F2_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46   1e-04  2
CB385132|CB385132.1 OSTF018F2_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46   1e-04  2
BJ106850|BJ106850.1 Caenorhabditis elegans cDNA clone:yk1089g04 : 5' end, single read.    46   1e-04  2
BJ134542|BJ134542.1 Caenorhabditis elegans cDNA clone:yk1089g04 : 3' end, single read.    46   1e-04  2
AB000919|AB000919.1 Caenorhabditis elegans mRNA for VHA-4, complete cds.    46   2e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_4(AC116956|pid:none) Dictyostelium discoideum chromosom...   318   1e-85
(Q2TA24) RecName: Full=V-type proton ATPase 21 kDa proteolipid s...   173   5e-42
AY892285_1(AY892285|pid:none) Synthetic construct Homo sapiens c...   173   5e-42
DQ347602_1(DQ347602|pid:none) Bos taurus clone H37 ATP6V0B mRNA,...   173   5e-42
DQ217212_1(DQ217212|pid:none) Taeniopygia guttata clone 0058P003...   172   6e-42
(Q91V37) RecName: Full=V-type proton ATPase 21 kDa proteolipid s...   171   1e-41
BC030393_1(BC030393|pid:none) Mus musculus ATPase, H+ transporti...   171   1e-41
EF146183_1(EF146183|pid:none) Populus trichocarpa clone WS0116_A...   170   3e-41
BC091622_1(BC091622|pid:none) Xenopus tropicalis ATPase, H+ tran...   170   4e-41
BT075706_1(BT075706|pid:none) Osmerus mordax clone omor-rgc-508-...   168   1e-40

 psg: 0.79  gvh: 0.53  alm: 0.22  top: 0.50  tms: 0.07  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.43  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSF221 is cyt

>SSF221F.Seq
TTTTTTTTTTTTTTTTTTTTTATCCTTTGCAAAGATTTAATTTTCTTATAAGGTTTTTTT
TTTATTTTTTTTTATTTTATTTTTTTTATTTTATTTTATTTTATTTTTTTTTATTTATTA
ATTTAAATTTATCTTTATGGTTTGAGTGCAGGTTGTTGTGTGACACCAAGAGCGTTAGTT
GTCATAAGAATACCGACAATAACAGCGTAAAGACCTAAGGCACCAGCGAAAATTTCAATA
ATAAGCATTTTAACAAAAAGTGATGGATTTTGAGCGTCACCCAATGCACAACCACTACCA
GCAATACCTACGCAAACACCTGAAAAAACATTACAAAGACCAACAGTGATACCGGCACCA
AACATCATGTAACCGGCCATATAATCGGAAGCTGGATCCCAAATATTTAAAAATTTATCG
ATTTTACCATTTAAAATAATAGCTAAAATAATACCATAAATAGCTACAGCTTCACAGAAA
ATAATACTAATAATATTTTTTGAACGAATTCTTGGTTCTTTAACGGCAGCACCCATAAGT
GATGATGCAGTGACCCAAATACCCCAAGCTGAACCAACAACTGATAAGGCTAATGAAAGG
CCAATACCAAGTGCAGCCCATGTTGATGGGGATATAGTTACAAGGAAATAAGTACCTTGA
TCATAATAGTTATTAT----------