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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH182
Library SS
(Link to library)
Clone ID SSH182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12270-1
Original site URL
Representative seq. ID SSH182E
(Link to Original site)
Representative DNA sequence 
>SSH182 (SSH182Q) /CSM/SS/SSH1-D/SSH182Q.Seq.d/
AAATAAATTAATAAAATGACACTCTTAGCTTCAATCTCATCAATTGGTAATGTTAAATCA
ATTTCAAAATCAAATAATTTTTCATCATTATCAAACTCATCATNACAATCATCAAACTCA
ATACAATGTGGTGGCTGCGGTGGTAGTCCATTAATGTGGTACTGTTGGTAATCTCGTAGG
TGGTGTACTTGTCGGAACTGGTATTANTGTTGGTACTGTCGNTGGAACTGTCAATGGTGN
TGTTGGTGGTTTATTAAGTGGTCCAAACTGTGGATGCCATTAAATTTATTAAAATCGATA
ATGTTTTTTTATAATAAATAAATTTGTATAAATAAAAAATGAATTTCA
sequence update 1998. 4.29
Translated Amino Acid sequence 
k*INKMTLLASISSIGNVKSISKSNNFSSLSNSSXQSSNSIQCGGCGGSPLMWYCW*srr
wctcrnwyxcwycrwncqwxcwwfikwsklwmplnllksimffynk*icinkk*is
Translated Amino Acid sequence (All Frames) 
Frame A:
k*INKMTLLASISSIGNVKSISKSNNFSSLSNSSXQSSNSIQCGGCGGSPLMWYCW*srr
wctcrnwyxcwycrwncqwxcwwfikwsklwmplnllksimffynk*icinkk*is


Frame B:
nklik*hs*lqshqlvmlnqfqnqiifhhyqthhxnhqtqynvvaavvvh*cgtvgnlvg
gvlvgtgixvgtvxgtvngxvggllsgpncgch*iy*nr*cffiinkfv*iknef


Frame C:
in**ndtlsfnlinw*c*infkik*ffiiiklixtiiklntmwwlrw*sinvvllvis*v
vylselvlxlvlsxelsmvxlvvy*vvqtvdaikfikidnvfl**inlyk*kmnf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH182 (SSH182Q) /CSM/SS/SSH1-D/SSH182Q.Seq.d/                        391   e-108
SSM548 (SSM548Q) /CSM/SS/SSM5-B/SSM548Q.Seq.d/                        375   e-103
SSI705 (SSI705Q) /CSM/SS/SSI7-A/SSI705Q.Seq.d/                        375   e-103
SSG177 (SSG177Q) /CSM/SS/SSG1-D/SSG177Q.Seq.d/                        375   e-103
SSF694 (SSF694Q) /CSM/SS/SSF6-D/SSF694Q.Seq.d/                        375   e-103
SSE204 (SSE204Q) /CSM/SS/SSE2-A/SSE204Q.Seq.d/                        375   e-103
SSA449 (SSA449Q) /CSM/SS/SSA4-C/SSA449Q.Seq.d/                        365   e-100
SSB221 (SSB221Q) /CSM/SS/SSB2-A/SSB221Q.Seq.d/                        363   1e-99
SSM662 (SSM662Q) /CSM/SS/SSM6-C/SSM662Q.Seq.d/                        361   5e-99
SSJ262 (SSJ262Q) /CSM/SS/SSJ2-C/SSJ262Q.Seq.d/                        361   5e-99
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038033) Dictyostelium discoideum slug cDNA, clone SSH182.      281   1e-96  2
(C89806) Dictyostelium discoideum slug cDNA, clone SSG177.        224   8e-90  3
(AU037712) Dictyostelium discoideum slug cDNA, clone SSE204.      224   8e-90  3
(C93302) Dictyostelium discoideum slug cDNA, clone SSM548.        224   8e-90  3
(C93353) Dictyostelium discoideum slug cDNA, clone SSM662.        210   1e-85  3
(C83872) Dictyostelium discoideum slug cDNA, clone SSA449.        224   1e-85  3
(C90879) Dictyostelium discoideum slug cDNA, clone SSJ262.        224   5e-85  4
(AU051947) Dictyostelium discoideum slug cDNA, clone SSC450.      188   7e-77  4
(C91341) Dictyostelium discoideum slug cDNA, clone SSK496.        188   7e-77  4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   224   3e-74  5
dna update 2009. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF101928_410(EF101928|pid:none) Acanthocystis turfacea Chlorella...    35   0.81
CP000249_3291(CP000249|pid:none) Frankia sp. CcI3, complete geno...    35   1.1
EF183519_1(EF183519|pid:none) Pinctada margaritifera KRMP-6 mRNA...    34   1.4
EF183518_1(EF183518|pid:none) Pinctada margaritifera KRMP-5 mRNA...    34   1.4
EF192243_1(EF192243|pid:none) Pinctada margaritifera KRMP-10 mRN...    33   2.4
DQ114790_1(DQ114790|pid:none) Pinctada fucata lysine-rich matrix...    33   4.0
AK125511_1(AK125511|pid:none) Homo sapiens cDNA FLJ43523 fis, cl...    33   4.0
DQ114789_1(DQ114789|pid:none) Pinctada fucata lysine-rich matrix...    33   4.0
EU017233_1(EU017233|pid:none) Trachelium caeruleum hypothetical ...    32   9.0
CT573213_5346(CT573213|pid:none) Frankia alni str. ACN14A chromo...    32   9.0
protein update 2009. 3. 6
PSORT 

 psg: 0.92  gvh: 0.55  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 32.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSH182 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH182E
Full length Seq. 
>SSH182E.Seq
AAATAAATTAATAAAATGACACTCTTAGCTTCAATCTCATCAATTGGTAATGTTAAATCA
ATTTCAAAATCAAATAATTTTTCATCATTATCAAACTCATCATNACAATCATCAAACTCA
ATACAATGTGGTGGCTGCGGTGGTAGTCCATTAATGTGGTACTGTTGGTAATCTCGTAGG
TGGTGTACTTGTCGGAACTGGTATTANTGTTGGTACTGTCGNTGGAACTGTCAATGGTGN
TGTTGGTGGTTTATTAAGTGGTCCAAACTGTGGATGCCATTAAATTTATTAAAATCGATA
ATGTTTTTTTATAATAAATAAATTTGTATAAATAAAAAATGAATTTCA
Length of full length seq. 348