>SSI339 (SSI339Q) /CSM/SS/SSI3-B/SSI339Q.Seq.d/
XXXXXXXXXXATTTACCTGTTCTAATAATCAAGTAATTTCATCCTCATTAGTTTCAGAGA
ATAATTGTATTTATACTGTAGAAATGAGTGGAAACATTTTTTGTCCCACTCCAACTCCAA
CTCCAACTCCAACTCCAACTCCTACTCCTAATCCAACTTCAAATGTAACCTGTAAATCAT
CCAATGGAATTTCAATAACTAGTTCAGATATCATTACATGTATTGGATATGGTCAATCAA
TATGTACAACATCATCAGGCTATTCATGTGAAACCAATCAAACTAATGGAGTTCTTAAAT
GTATTTCACCTGATAATTCAATTTCATGTATTGGTAATCAATTCTATTGTTATACTCAAT
CTTATACATGCTCAGTTGATTTTAAATCTTATGATGGATTACAAGTGAATGGTAAAATCA
TTAATTCAACTTATTTTTCATCATAATTTACTTCAAAATGCTCCTTTTTACGATGCCAAG
TAATTCATTAAAAACTTAAAAAGTAATAAAAAATAGCTTATATTTATTTAAATATTAATN
CTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA

---FTCSNNQVISSSLVSENNCIYTVEMSGNIFCPTPTPTPTPTPTPTPNPTSNVTCKSS
NGISITSSDIITCIGYGQSICTTSSGYSCETNQTNGVLKCISPDNSISCIGNQFYCYTQS
YTCSVDFKSYDGLQVNGKIINSTYFSS*ftskcsflrcqvih*klkk**kiayiylninx
nfkkkkkkkk

Frame A:
---FTCSNNQVISSSLVSENNCIYTVEMSGNIFCPTPTPTPTPTPTPTPNPTSNVTCKSS
NGISITSSDIITCIGYGQSICTTSSGYSCETNQTNGVLKCISPDNSISCIGNQFYCYTQS
YTCSVDFKSYDGLQVNGKIINSTYFSS*ftskcsflrcqvih*klkk**kiayiylninx
nfkkkkkkkk


Frame B:
---lpvliik*fhph*fqriivfil*k*vetffvplqlqlqlqlqlllliqlqm*pvnhp
mefq*lvqislhvldmvnqyvqhhqaihvkpiklmeflnvfhliiqfhvlvinsivilnl
ihaqlilnlmmdyk*mvksliqlifhhnllqnapfydak*fiknlksnkk*lifi*ilxl
ilkkkkkkkk


Frame C:
---ylf**ssnfilisfre*lylycrnewkhflshsnsnsnsnsnsys*snfkcnl*iiq
wnfnn*fryhymywiwsinmyniirlfm*nqsn*wss*myft**fnfmyw*silllysil
ymls*f*il*witsew*nh*fnlffiiiyfkmllftmpsnslkt*kviknslylfky*x*
f*kkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI339 (SSI339Q) /CSM/SS/SSI3-B/SSI339Q.Seq.d/                        654   0.0
SSF554 (SSF554Q) /CSM/SS/SSF5-C/SSF554Q.Seq.d/                        654   0.0
SSD172 (SSD172Q) /CSM/SS/SSD1-C/SSD172Q.Seq.d/                        654   0.0
SSA767 (SSA767Q) /CSM/SS/SSA7-C/SSA767Q.Seq.d/                        654   0.0
SSC463 (SSC463Q) /CSM/SS/SSC4-C/SSC463Q.Seq.d/                        613   e-174
SLH555 (SLH555Q) /CSM/SL/SLH5-C/SLH555Q.Seq.d/                         38   0.14
SLB193 (SLB193Q) /CSM/SL/SLB1-D/SLB193Q.Seq.d/                         38   0.14
SHL410 (SHL410Q) /CSM/SH/SHL4-A/SHL410Q.Seq.d/                         38   0.14
FC-BF06 (FC-BF06Q) /CSM/FC/FC-BF/FC-BF06Q.Seq.d/                       38   0.14
SFK809 (SFK809Q) /CSM/SF/SFK8-A/SFK809Q.Seq.d/                         36   0.56

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC064813|AC064813.2 Homo sapiens chromosome 15 clone RP11-691D11 map 15, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40  0.31  4
AC109946|AC109946.5 Rattus norvegicus clone CH230-288M12, WORKING DRAFT SEQUENCE, 1 ordered piece.    38  0.40  5
AC122446|AC122446.4 Mus musculus chromosome 17 clone RP24-240N12, complete sequence.    46  0.47  1
BM598965|BM598965.1 17000687687920 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449701382 5', mRNA sequence.    46  0.47  1
BM597672|BM597672.1 17000687500233 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449708554 5', mRNA sequence.    46  0.47  1
BM606412|BM606412.1 17000687083330 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449709088 5', mRNA sequence.    46  0.47  1
AC010165|AC010165.10 Homo sapiens chromosome 5 clone RP11-17J3, complete sequence.    40  0.71  3
AC087556|AC087556.30 Mus musculus chromosome 16 clone rp23-123l9 strain C57BL/6J, complete sequence.    44  1.3  2
AX232505|AX232505.1 Sequence 3 from Patent WO0162969.             44  1.9  1
BB767753|BB767753.1 Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370077M05, 3' end partial sequence.    44  1.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_104(AC116957|pid:none) Dictyostelium discoideum chromos...    40   0.057
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    40   0.057
(P54681) RecName: Full=Protein rtoA; AltName: Full=Ratio-A; Flag...    35   1.1
AC116032_6(AC116032|pid:none) Dictyostelium discoideum chromosom...    35   1.1

 psg: 0.89  gvh: 0.36  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI339 is cyt

>SSI339Z.Seq
----------ATTTACCTGTTCTAATAATCAAGTAATTTCATCCTCATTAGTTTCAGAGA
ATAATTGTATTTATACTGTAGAAATGAGTGGAAACATTTTTTGTCCCACTCCAACTCCAA
CTCCAACTCCAACTCCAACTCCTACTCCTAATCCAACTTCAAATGTAACCTGTAAATCAT
CCAATGGAATTTCAATAACTAGTTCAGATATCATTACATGTATTGGATATGGTCAATCAA
TATGTACAACATCATCAGGCTATTCATGTGAAACCAATCAAACTAATGGAGTTCTTAAAT
GTATTTCACCTGATAATTCAATTTCATGTATTGGTAATCAATTCTATTGTTATACTCAAT
CTTATACATGCTCAGTTGATTTTAAATCTTATGATGGATTACAAGTGAATGGTAAAATCA
TTAATTCAACTTATTTTTCATCATAATTTACTTCAAAATGCTCCTTTTTACGATGCCAAG
TAATTCATTAAAAACTTAAAAAGTAATAAAAAATAGCTTATATTTATTTAAATATTAATN
CTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA