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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ267
Library SS
(Link to library)
Clone ID SSJ267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSJ267E
(Link to Original site)
Representative DNA sequence 
>SSJ267 (SSJ267Q) /CSM/SS/SSJ2-C/SSJ267Q.Seq.d/
ACTAAAGGTACATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGA
TGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCC
GCCAAAACCAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACC
GGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCC
TCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTAAAA
AAAAAAAAA
sequence update 1998. 1. 8
Translated Amino Acid sequence 
TKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGT
GRTRYLKTVHKRFNSGFKEASLAVKKTAAK*ikssn*ivkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
TKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGT
GRTRYLKTVHKRFNSGFKEASLAVKKTAAK*ikssn*ivkkkk


Frame B:
lkvhsvlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpdlttgvlklnverppvp
vepdi*rlstrdstvvskkpl*pskklllnk*nlqik**kkk


Frame C:
*ryiqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr
*nqifedcpqeiqqwfqrslfsrqkncc*inkifklnskkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ502 (VSJ502Q) /CSM/VS/VSJ5-A/VSJ502Q.Seq.d/                        545   e-154
VSJ359 (VSJ359Q) /CSM/VS/VSJ3-C/VSJ359Q.Seq.d/                        545   e-154
VSJ208 (VSJ208Q) /CSM/VS/VSJ2-A/VSJ208Q.Seq.d/                        545   e-154
VSI187 (VSI187Q) /CSM/VS/VSI1-D/VSI187Q.Seq.d/                        545   e-154
VSI165 (VSI165Q) /CSM/VS/VSI1-C/VSI165Q.Seq.d/                        545   e-154
VSG641 (VSG641Q) /CSM/VS/VSG6-B/VSG641Q.Seq.d/                        545   e-154
VSG517 (VSG517Q) /CSM/VS/VSG5-A/VSG517Q.Seq.d/                        545   e-154
VSG428 (VSG428Q) /CSM/VS/VSG4-B/VSG428Q.Seq.d/                        545   e-154
VSG421 (VSG421Q) /CSM/VS/VSG4-A/VSG421Q.Seq.d/                        545   e-154
VSG140 (VSG140Q) /CSM/VS/VSG1-B/VSG140Q.Seq.d/                        545   e-154
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY181247|AY181247.1 Candida glabrata putative mating-type locus, partial sequence.    82   2e-15  2
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073.    56   4e-10  2
T38640|T38640.1 EST104157 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    56   4e-10  2
AZ924870|AZ924870.1 4906.id55k08.s1 Saccharomyces mikatae IFO 1815 Saccharomyces mikatae genomic clone 4906.id55k08.s1, DNA sequence.    72   5e-09  1
BG661500|BG661500.1 kx02f09.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL37_CAEEL P49622 PROBABLE 60S RIBOSOMAL PROTEIN L37. [3] TR:O62388 WP:CE05493 ;, mRNA sequence.    70   2e-08  1
AJ390504|AJ390504.1 Candida albicans partial mRNA for ribosomal protein L37 (rpl37 gene).    64   8e-08  2
AY181248|AY181248.1 Kluyveromyces delphensis putative mating-type locus, partial sequence.    50   8e-08  2
AX027754|AX027754.1 Sequence 4 from Patent WO0034481.              64   1e-07  2
T38861|T38861.1 EST104425 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    64   1e-06  1
U17246|U17246.1 Saccharomyces cerevisiae chromosome XII cosmid 9470.    64   1e-06  1
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MG6) RecName: Full=60S ribosomal protein L37;                     162   4e-39
BT076110_1(BT076110|pid:none) Caligus rogercresseyi clone crog-e...   116   3e-25
CR954207_405(CR954207|pid:none) Ostreococcus tauri strain OTTH05...   114   1e-24
AM049129_1(AM049129|pid:none) Timarcha balearica mRNA for riboso...   114   1e-24
EF639014_1(EF639014|pid:none) Triatoma infestans clone TI-498 60...   114   1e-24
(P05733) RecName: Full=60S ribosomal protein L37-B; AltName: Ful...   114   1e-24
CP001323_357(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   112   5e-24
AM049128_1(AM049128|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   112   5e-24
AM049127_1(AM049127|pid:none) Biphyllus lunatus mRNA for ribosom...   111   7e-24
AY181247_5(AY181247|pid:none) Candida glabrata putative mating-t...   111   9e-24
protein update 2009. 7. 8
PSORT 

 psg: 0.68  gvh: 0.33  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.77  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 36.0 %: mitochondrial

>> prediction for SSJ267 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSJ267E
Full length Seq. 
>SSJ267E.Seq
ACTAAAGGTACATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGA
TGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCC
GCCAAAACCAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACC
GGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCC
TCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTAAAA
AAAAAAAAA
Length of full length seq. 309