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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL617
Library AF
(Link to library)
Clone ID AFL617
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL617P
(Link to Original site)
Representative DNA sequence 
>AFL617 (AFL617Q) /CSM/AF/AFL6-A/AFL617Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCNNCTTTTTTGAAAAAAAAAAX
XXXXXXXXXTTTTNNNAANACCCNNNCGGTANNNTNTANANTNNAANTTNAAGGTAGTNN
NANCNTTNANANNGTNNNNNNAANATTCAANATAANNNAGGGTNTTCCNNCAGATCAANA
NNGTNTNATTTTNNNTGGTAANCANTTANAANATGNTNGGACTNTNTNTGANNACAATAT
CCAAAAAGAATCNNCTNTCCACTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGT
CAAAACATTAACTGGTAAGACCATCACTNTTGAAGTTGAGGGCTCAGATAATATTGAAAA
TGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTT
CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCAC
TGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAA
AATCCAAGACAAAGAAGGTATTCCACCGGATCAACAACGTCTCATTTTCGCCGGTAAACA
ATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTT
AGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCAT
TACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAA
AGAAGGTATTCC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
nsfllyky*ihilffyil*HFIKKKKKKKFKKXXFLKKK---

---FXXTXXVXXXXXXXGSXXXXXVXXXFXIXXGXPXDQXXXIXXGXXLXXXXTXXXXNI
QKESXXHLVLXLXGGMQXFVKTLTGKTITXEVEGSDNIENVXXKIQDKEGIPPDQQRLIF
AGKQLEDGRTLSDYNIQKESXLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAK
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI
TLEVEGSDNIENVXTKIQDKEGI
Translated Amino Acid sequence (All Frames) 
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkki*kxxffekk---

---fxxxpxgxxxxxxxr*xxxxxxxxxiqxxxgxsxrsxxxxfxw*xxxxxxdxx*xqy
pkrixxplgpxixrwyanxcqninw*dhhx*s*glr*y*kcxxkdsrqrryptrptkinf
rw*tirrwsysl*lqhskgixspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sq
nprqrrystgsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nh
ytrs*r**qh*ecxnknsrqrrys

Frame B:
nsfllyky*ihilffyil*HFIKKKKKKKFKKXXFLKKK---

---FXXTXXVXXXXXXXGSXXXXXVXXXFXIXXGXPXDQXXXIXXGXXLXXXXTXXXXNI
QKESXXHLVLXLXGGMQXFVKTLTGKTITXEVEGSDNIENVXXKIQDKEGIPPDQQRLIF
AGKQLEDGRTLSDYNIQKESXLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAK
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI
TLEVEGSDNIENVXTKIQDKEGI

Frame C:
ihfyytnikfifyffiycnis*kkkkkknlkxxlf*kkk---

---xxxpxrxxxxxxxkvvxxxxxxxxxsx*xrvfxqixxvxfxxvxxxxmxglxxxtis
kknxlstwssx*xvvckxlskh*lvrpsllklraqiilkmlxqrfktkkvshqtnkd*fs
lvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpk
sktkkvfhrinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkpl
hsklkvvttlrm*xqkfktkkvf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL617 (AFL617Q) /CSM/AF/AFL6-A/AFL617Q.Seq.d/                       1183   0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/                       1168   0.0
CFK168 (CFK168Q) /CSM/CF/CFK1-C/CFK168Q.Seq.d/                       1162   0.0
CFF743 (CFF743Q) /CSM/CF/CFF7-B/CFF743Q.Seq.d/                       1162   0.0
CFF542 (CFF542Q) /CSM/CF/CFF5-B/CFF542Q.Seq.d/                       1162   0.0
CFF446 (CFF446Q) /CSM/CF/CFF4-B/CFF446Q.Seq.d/                       1162   0.0
AFG821 (AFG821Q) /CSM/AF/AFG8-A/AFG821Q.Seq.d/                       1162   0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/                       1160   0.0
CHD793 (CHD793Q) /CSM/CH/CHD7-D/CHD793Q.Seq.d/                       1160   0.0
CFC679 (CFC679Q) /CSM/CF/CFC6-D/CFC679Q.Seq.d/                       1160   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346460) Dictyostelium discoideum cDNA clone:dda24a06, 3' ...  1183   0.0    1
(BJ400632) Dictyostelium discoideum cDNA clone:dds14h06, 3' ...  1168   0.0    1
(BJ376198) Dictyostelium discoideum cDNA clone:ddc21g17, 3' ...  1162   0.0    1
(BJ372367) Dictyostelium discoideum cDNA clone:ddc12f11, 3' ...  1162   0.0    1
(BJ372355) Dictyostelium discoideum cDNA clone:ddc12c11, 3' ...  1162   0.0    1
(BJ372131) Dictyostelium discoideum cDNA clone:ddc11l12, 3' ...  1162   0.0    1
(BJ342465) Dictyostelium discoideum cDNA clone:dda14j06, 3' ...  1162   0.0    1
(BJ399993) Dictyostelium discoideum cDNA clone:dds8i11, 3' e...  1160   0.0    1
(BJ376772) Dictyostelium discoideum cDNA clone:ddc29j23, 3' ...  1160   0.0    1
(BJ374189) Dictyostelium discoideum cDNA clone:ddc6m20, 3' e...  1160   0.0    1
dna update 2009. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   387   e-106
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   387   e-106
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   387   e-106
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   385   e-105
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   371   e-101
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   371   e-101
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   371   e-101
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   371   e-101
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   371   e-101
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   369   e-101
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL617 is

5' end seq. ID AFL617F
5' end seq. 
>AFL617F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCNNCTTTTTTGAAAAAAAAAAX
XXXXXXXXX
Length of 5' end seq. 129
3' end seq. ID AFL617Z
3' end seq. 
>AFL617Z.Seq
XXXXXXXXXXTTTTNNNAANACCCNNNCGGTANNNTNTANANTNNAANTTNAAGGTAGTN
NNANCNTTNANANNGTNNNNNNAANATTCAANATAANNNAGGGTNTTCCNNCAGATCAAN
ANNGTNTNATTTTNNNTGGTAANCANTTANAANATGNTNGGACTNTNTNTGANNACAATA
TCCAAAAAGAATCNNCTNTCCACTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTG
TCAAAACATTAACTGGTAAGACCATCACTNTTGAAGTTGAGGGCTCAGATAATATTGAAA
ATGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTT
TCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAAT
CCNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCA
CTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCA
AAATCCAAGACAAAGAAGGTATTCCACCGGATCAACAACGTCTCATTTTCGCCGGTAAAC
AATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCA
TTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACA
AAGAAGGTATTCC
Length of 3' end seq. 793
Connected seq. ID AFL617P
Connected seq. 
>AFL617P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCNNCTTTTTTGAAAAAAAAAA-
---------TTTTNNNAANACCCNNNCGGTANNNTNTANANTNNAANTTNAAGGTAGTNN
NANCNTTNANANNGTNNNNNNAANATTCAANATAANNNAGGGTNTTCCNNCAGATCAANA
NNGTNTNATTTTNNNTGGTAANCANTTANAANATGNTNGGACTNTNTNTGANNACAATAT
CCAAAAAGAATCNNCTNTCCACTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGT
CAAAACATTAACTGGTAAGACCATCACTNTTGAAGTTGAGGGCTCAGATAATATTGAAAA
TGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTT
CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCAC
TGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAA
AATCCAAGACAAAGAAGGTATTCCACCGGATCAACAACGTCTCATTTTCGCCGGTAAACA
ATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTT
AGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCAT
TACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAA
AGAAGGTATTCC
Length of connected seq. 902
Full length Seq ID -
Full length Seq. -
Length of full length seq. -