AFL617
Library AF
(Link to library)
Clone ID AFL617
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL617P
(Link to Original site)
Representative DNA sequence
>AFL617 (AFL617Q) /CSM/AF/AFL6-A/AFL617Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCNNCTTTTTTGAAAAAAAAAAX
XXXXXXXXXTTTTNNNAANACCCNNNCGGTANNNTNTANANTNNAANTTNAAGGTAGTNN
NANCNTTNANANNGTNNNNNNAANATTCAANATAANNNAGGGTNTTCCNNCAGATCAANA
NNGTNTNATTTTNNNTGGTAANCANTTANAANATGNTNGGACTNTNTNTGANNACAATAT
CCAAAAAGAATCNNCTNTCCACTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGT
CAAAACATTAACTGGTAAGACCATCACTNTTGAAGTTGAGGGCTCAGATAATATTGAAAA
TGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTT
CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCAC
TGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAA
AATCCAAGACAAAGAAGGTATTCCACCGGATCAACAACGTCTCATTTTCGCCGGTAAACA
ATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTT
AGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCAT
TACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAA
AGAAGGTATTCC
sequence update 2009. 4. 3
Translated Amino Acid sequence
nsfllyky*ihilffyil*HFIKKKKKKKFKKXXFLKKK---

---FXXTXXVXXXXXXXGSXXXXXVXXXFXIXXGXPXDQXXXIXXGXXLXXXXTXXXXNI
QKESXXHLVLXLXGGMQXFVKTLTGKTITXEVEGSDNIENVXXKIQDKEGIPPDQQRLIF
AGKQLEDGRTLSDYNIQKESXLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAK
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI
TLEVEGSDNIENVXTKIQDKEGI


Translated Amino Acid sequence (All Frames)
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkki*kxxffekk---

---fxxxpxgxxxxxxxr*xxxxxxxxxiqxxxgxsxrsxxxxfxw*xxxxxxdxx*xqy
pkrixxplgpxixrwyanxcqninw*dhhx*s*glr*y*kcxxkdsrqrryptrptkinf
rw*tirrwsysl*lqhskgixspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sq
nprqrrystgsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nh
ytrs*r**qh*ecxnknsrqrrys

Frame B:
nsfllyky*ihilffyil*HFIKKKKKKKFKKXXFLKKK---

---FXXTXXVXXXXXXXGSXXXXXVXXXFXIXXGXPXDQXXXIXXGXXLXXXXTXXXXNI
QKESXXHLVLXLXGGMQXFVKTLTGKTITXEVEGSDNIENVXXKIQDKEGIPPDQQRLIF
AGKQLEDGRTLSDYNIQKESXLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAK
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI
TLEVEGSDNIENVXTKIQDKEGI

Frame C:
ihfyytnikfifyffiycnis*kkkkkknlkxxlf*kkk---

---xxxpxrxxxxxxxkvvxxxxxxxxxsx*xrvfxqixxvxfxxvxxxxmxglxxxtis
kknxlstwssx*xvvckxlskh*lvrpsllklraqiilkmlxqrfktkkvshqtnkd*fs
lvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpk
sktkkvfhrinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkpl
hsklkvvttlrm*xqkfktkkvf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL617 (AFL617Q) /CSM/AF/AFL6-A/AFL617Q.Seq.d/ 1183 0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/ 1168 0.0
CFK168 (CFK168Q) /CSM/CF/CFK1-C/CFK168Q.Seq.d/ 1162 0.0
CFF743 (CFF743Q) /CSM/CF/CFF7-B/CFF743Q.Seq.d/ 1162 0.0
CFF542 (CFF542Q) /CSM/CF/CFF5-B/CFF542Q.Seq.d/ 1162 0.0
CFF446 (CFF446Q) /CSM/CF/CFF4-B/CFF446Q.Seq.d/ 1162 0.0
AFG821 (AFG821Q) /CSM/AF/AFG8-A/AFG821Q.Seq.d/ 1162 0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/ 1160 0.0
CHD793 (CHD793Q) /CSM/CH/CHD7-D/CHD793Q.Seq.d/ 1160 0.0
CFC679 (CFC679Q) /CSM/CF/CFC6-D/CFC679Q.Seq.d/ 1160 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346460) Dictyostelium discoideum cDNA clone:dda24a06, 3' ... 1183 0.0 1
(BJ400632) Dictyostelium discoideum cDNA clone:dds14h06, 3' ... 1168 0.0 1
(BJ376198) Dictyostelium discoideum cDNA clone:ddc21g17, 3' ... 1162 0.0 1
(BJ372367) Dictyostelium discoideum cDNA clone:ddc12f11, 3' ... 1162 0.0 1
(BJ372355) Dictyostelium discoideum cDNA clone:ddc12c11, 3' ... 1162 0.0 1
(BJ372131) Dictyostelium discoideum cDNA clone:ddc11l12, 3' ... 1162 0.0 1
(BJ342465) Dictyostelium discoideum cDNA clone:dda14j06, 3' ... 1162 0.0 1
(BJ399993) Dictyostelium discoideum cDNA clone:dds8i11, 3' e... 1160 0.0 1
(BJ376772) Dictyostelium discoideum cDNA clone:ddc29j23, 3' ... 1160 0.0 1
(BJ374189) Dictyostelium discoideum cDNA clone:ddc6m20, 3' e... 1160 0.0 1
dna update 2009. 4. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 387 e-106
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 387 e-106
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 387 e-106
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 385 e-105
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 371 e-101
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 371 e-101
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 371 e-101
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 371 e-101
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 371 e-101
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 369 e-101
protein update 2009. 4. 4
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFL617 is

5' end seq. ID AFL617F
5' end seq.
>AFL617F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCNNCTTTTTTGAAAAAAAAAAX
XXXXXXXXX
Length of 5' end seq. 129
3' end seq. ID AFL617Z
3' end seq.
>AFL617Z.Seq
XXXXXXXXXXTTTTNNNAANACCCNNNCGGTANNNTNTANANTNNAANTTNAAGGTAGTN
NNANCNTTNANANNGTNNNNNNAANATTCAANATAANNNAGGGTNTTCCNNCAGATCAAN
ANNGTNTNATTTTNNNTGGTAANCANTTANAANATGNTNGGACTNTNTNTGANNACAATA
TCCAAAAAGAATCNNCTNTCCACTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTG
TCAAAACATTAACTGGTAAGACCATCACTNTTGAAGTTGAGGGCTCAGATAATATTGAAA
ATGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTT
TCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAAT
CCNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCA
CTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCA
AAATCCAAGACAAAGAAGGTATTCCACCGGATCAACAACGTCTCATTTTCGCCGGTAAAC
AATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCA
TTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACA
AAGAAGGTATTCC
Length of 3' end seq. 793
Connected seq. ID AFL617P
Connected seq.
>AFL617P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCNNCTTTTTTGAAAAAAAAAA-
---------TTTTNNNAANACCCNNNCGGTANNNTNTANANTNNAANTTNAAGGTAGTNN
NANCNTTNANANNGTNNNNNNAANATTCAANATAANNNAGGGTNTTCCNNCAGATCAANA
NNGTNTNATTTTNNNTGGTAANCANTTANAANATGNTNGGACTNTNTNTGANNACAATAT
CCAAAAAGAATCNNCTNTCCACTTGGTCCTCANATTAANAGGTGGTATGCAAATNTTTGT
CAAAACATTAACTGGTAAGACCATCACTNTTGAAGTTGAGGGCTCAGATAATATTGAAAA
TGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTT
CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCAC
TGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAA
AATCCAAGACAAAGAAGGTATTCCACCGGATCAACAACGTCTCATTTTCGCCGGTAAACA
ATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTT
AGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCAT
TACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAA
AGAAGGTATTCC
Length of connected seq. 902
Full length Seq ID -
Full length Seq. -
Length of full length seq. -