>SSJ818 (SSJ818Q) /CSM/SS/SSJ8-A/SSJ818Q.Seq.d/
XXXXXXXXXXTAATAATAATAATAATAATAATAATATGTCATATTTATTAACACATCTTC
CAAATGGGTGGGCTATTGATCAAGCAATTGTCACTGAAGAAGATAGAGTTGTAGTTATAC
GTTTTGGCCATGATTATAATCCGGAATGTATGAAACAAGATGATATTTTAGCATCAATTG
CAGAGAAAGTTAAAAATATGGCTGTAATTTATGTGGTAAGTATAATTATTTCACCTTTTA
ATTTTAGAATTTTCAAAAATGATTTTTGAATTATATGTATAAAAATTTTATGAATTAAAA
TAAAATAAATTAAAAAATAATAATAAAAATAAAATAAACTTTATCATGGGAATGGTTGAT
ATTACAGAAGTCCCAGATTTAAATTCAATGTATGAGTTATATGACGATTGCACAACTATG
TTTTTTTATAGAAATAAACATATTATGGTCGATTTAGGTACTGGTAATAATAATAAAATT
AATTGGGCACTAACAAATAAACAAGATATGATTGATATCATTGAGACTGTTTATAGAGGT
GCTAGAAAAGGAAAAGGTCTTGTTAATTCACCAAGAGATTTTTCAACCAAATATAAATAT
TAAAAAAAAAAAAAAAAAA

---iiiiiiiichiy*hifqmggllikqlslkkiel*lyvlamiiirnv*nkmif*hqlq
rklkiwl*fmw*v*lfhllilefskmifelyv*kfyelk*NKLKNNNKNKINFIMGMVDI
TEVPDLNSMYELYDDCTTMFFYRNKHIMVDLGTGNNNKINWALTNKQDMIDIIETVYRGA
RKGKGLVNSPRDFSTKYKY*kkkkk

Frame A:
---nnnnnnnnmsyllthlpngwaidqaivteedrvvvirfghdynpecmkqddilasia
ekvknmaviyvvsiiispfnfrifkndf*iicikil*ikik*ikk***k*nklyhgng*y
yrsprfkfnv*vi*rlhnyvfl*k*tyygrfryw****n*lgtnk*tryd*yh*dcl*rc
*krkrsc*ftkrffnqi*ilkkkkk


Frame B:
---iiiiiiiichiy*hifqmggllikqlslkkiel*lyvlamiiirnv*nkmif*hqlq
rklkiwl*fmw*v*lfhllilefskmifelyv*kfyelk*NKLKNNNKNKINFIMGMVDI
TEVPDLNSMYELYDDCTTMFFYRNKHIMVDLGTGNNNKINWALTNKQDMIDIIETVYRGA
RKGKGLVNSPRDFSTKYKY*kkkkk


Frame C:
---*******yvifintsskwvgy*ssnch*rr*scsytfwp*l*sgmyetr*yfsincr
es*kygcnlcgkynyftf*f*nfqk*flnymyknfmn*nkin*kiiikik*tlswewlil
qksqi*iqcmsymtiaqlcffieinilwsi*vlviiikligh*qinki*lislrlfievl
ekekvllihqeifqpninikkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ818 (SSJ818Q) /CSM/SS/SSJ8-A/SSJ818Q.Seq.d/                        480   e-134
CHP388 (CHP388Q) /CSM/CH/CHP3-D/CHP388Q.Seq.d/                         42   0.010
VFK187 (VFK187Q) /CSM/VF/VFK1-D/VFK187Q.Seq.d/                         40   0.039
VFJ896 (VFJ896Q) /CSM/VF/VFJ8-D/VFJ896Q.Seq.d/                         40   0.039
VFF189 (VFF189Q) /CSM/VF/VFF1-D/VFF189Q.Seq.d/                         40   0.039
VFD742 (VFD742Q) /CSM/VF/VFD7-B/VFD742Q.Seq.d/                         40   0.039
SSJ777 (SSJ777Q) /CSM/SS/SSJ7-D/SSJ777Q.Seq.d/                         40   0.039
SFA873 (SFA873Q) /CSM/SF/SFA8-D/SFA873Q.Seq.d/                         40   0.039
CHL516 (CHL516Q) /CSM/CH/CHL5-A/CHL516Q.Seq.d/                         40   0.039
CHC843 (CHC843Q) /CSM/CH/CHC8-B/CHC843Q.Seq.d/                         40   0.039

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE029011|BE029011.1 kp23f08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similarto TR:P87215 P87215 ESSENTIAL FOR MITOSIS DIM1P. ;, mRNA sequence.    78   2e-38  4
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    64   4e-24  10
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    64   4e-24  3
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    64   4e-24  7
BI936144|BI936144.1 PfESToaa26f05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:DIM1_HUMAN O14834 DIM1 PROTEIN HOMOLOG. ;, mRNA sequence.    64   5e-24  3
T09702|T09702.1 0292m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 0292m, DNA sequence.    64   1e-20  3
AX471874|AX471874.1 Sequence 16 from Patent WO02053589.            64   4e-16  4
BP512353|BP512353.1 Hydra magnipapillata cDNA, clone:hmp_07001.    64   2e-15  2
AZ522383|AZ522383.1 206PbB02 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    78   3e-14  2
AL109957|AL109957.2 S.pombe chromosome III cosmid c16A11.          64   1e-11  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY813186_1(AY813186|pid:none) Schistosoma japonicum SJCHGC05540 ...   138   2e-53
FN359299_28(FN359299|pid:none) Schistosoma mansoni genome sequen...   137   8e-53
CP000592_211(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   137   3e-52
CU633457_152(CU633457|pid:none) Podospora anserina genomic DNA c...   130   1e-47
AM270020_4(AM270020|pid:none) Aspergillus niger contig An02c0250...   125   2e-45
AM920433_176(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   124   4e-45
CU928175_703(CU928175|pid:none) Zygosaccharomyces rouxii strain ...   108   3e-40
AE017349_153(AE017349|pid:none) Cryptococcus neoformans var. neo...   144   2e-33
(P83876) RecName: Full=Thioredoxin-like protein 4A; AltName: Ful...   143   4e-33
BC157181_1(BC157181|pid:none) Xenopus tropicalis thioredoxin-lik...   143   4e-33

 psg: 0.92  gvh: 0.30  alm: 0.49  top: 0.33  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSJ818 is cyt

>SSJ818Z.Seq
----------TAATAATAATAATAATAATAATAATATGTCATATTTATTAACACATCTTC
CAAATGGGTGGGCTATTGATCAAGCAATTGTCACTGAAGAAGATAGAGTTGTAGTTATAC
GTTTTGGCCATGATTATAATCCGGAATGTATGAAACAAGATGATATTTTAGCATCAATTG
CAGAGAAAGTTAAAAATATGGCTGTAATTTATGTGGTAAGTATAATTATTTCACCTTTTA
ATTTTAGAATTTTCAAAAATGATTTTTGAATTATATGTATAAAAATTTTATGAATTAAAA
TAAAATAAATTAAAAAATAATAATAAAAATAAAATAAACTTTATCATGGGAATGGTTGAT
ATTACAGAAGTCCCAGATTTAAATTCAATGTATGAGTTATATGACGATTGCACAACTATG
TTTTTTTATAGAAATAAACATATTATGGTCGATTTAGGTACTGGTAATAATAATAAAATT
AATTGGGCACTAACAAATAAACAAGATATGATTGATATCATTGAGACTGTTTATAGAGGT
GCTAGAAAAGGAAAAGGTCTTGTTAATTCACCAAGAGATTTTTCAACCAAATATAAATAT
TAAAAAAAAAAAAAAAAAA