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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL715
Library AF
(Link to library)
Clone ID AFL715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL715P
(Link to Original site)
Representative DNA sequence 
>AFL715 (AFL715Q) /CSM/AF/AFL7-A/AFL715Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNCTTTTTTGAAAAAAAAAAXX
XXXXXXXXANNNNNGNNTNNNNNNNNNNNNNNNNNNNNNNNTTTNNNNTGGTNNNNNNTT
NNNNNANGNTNGNNNTNTNTNNNNTNNNAANANNNANAAANNANNNNNTNTNNNNTTGGT
CNTNANATTAANAGNTGGTATNNNNATNTTTGTNANANCATTNNNTGGTAANNCNATCNN
TNTTNAAGTTNAGGGTCANATAATATTNNNAATGTTAAANCAAANATTCAAGNCAAANAA
GGTATCCCNCCAGNCCANCAAAGATTAATTTTNGNTGGTAANCAANTAGAAGATGGTNGT
ACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGA
GGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAA
GGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCA
GATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGAT
TACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAA
ATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAAC
ATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
KFIFIIQILNSYFIFLYIVTFHKKKKKKKXKKSXFLKKK---

---XXXXXXXXXXXXXGXXXXXXXXXXXXXXXKXXXXXLVXXLXXGXXXFVXXXXGXXIX
XXVXGXIIXXMLXQXFKXXKVSXQXXKD*fxxvxx*kmvvlsxittfkrnplsi*ssd*e
vvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmvvlsli
ttfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkv
Translated Amino Acid sequence (All Frames) 
Frame A:
KFIFIIQILNSYFIFLYIVTFHKKKKKKKXKKSXFLKKK---

---xxxxxxxxxxxfxxvxxxxxxxxxxxxxxxxxxxxxwsxx*xxvxxxlxxhxxvxxs
xxkxrvx*yxxc*xkxsxqxrypxxpxkinfxw*xxrrwxysl*lqhskgihspfspqik
rwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tiggwsysl*
lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrry

Frame B:
nsfllyky*ihilffyil*hfikkkkkkxlknxlf*kkk---

---xxxxxxxxxxxxxwxxxxxxxxxxxxxxxxxxxxxxgxxixxwyxxxcxxixw*xxx
xxsxgsxnixnvkxxiqxkxgippxxqrlixxgxqxedgxtlxdyniqkestlhlvlrlr
ggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkeg

Frame C:
ihfyytnikfifyffiycnis*kkkkkkx*kixffekk---

---XXXXXXXXXXXXXGXXXXXXXXXXXXXXXKXXXXXLVXXLXXGXXXFVXXXXGXXIX
XXVXGXIIXXMLXQXFKXXKVSXQXXKD*fxxvxx*kmvvlsxittfkrnplsi*ssd*e
vvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmvvlsli
ttfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL715 (AFL715Q) /CSM/AF/AFL7-A/AFL715Q.Seq.d/                        918   0.0
CHC625 (CHC625Q) /CSM/CH/CHC6-B/CHC625Q.Seq.d/                        916   0.0
CHB730 (CHB730Q) /CSM/CH/CHB7-B/CHB730Q.Seq.d/                        912   0.0
VFL296 (VFL296Q) /CSM/VF/VFL2-D/VFL296Q.Seq.d/                        904   0.0
VFK823 (VFK823Q) /CSM/VF/VFK8-A/VFK823Q.Seq.d/                        904   0.0
VFK729 (VFK729Q) /CSM/VF/VFK7-B/VFK729Q.Seq.d/                        904   0.0
VFK183 (VFK183Q) /CSM/VF/VFK1-D/VFK183Q.Seq.d/                        904   0.0
VFJ305 (VFJ305Q) /CSM/VF/VFJ3-A/VFJ305Q.Seq.d/                        904   0.0
VFI713 (VFI713Q) /CSM/VF/VFI7-A/VFI713Q.Seq.d/                        904   0.0
VFB295 (VFB295Q) /CSM/VF/VFB2-D/VFB295Q.Seq.d/                        904   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ378100) Dictyostelium discoideum cDNA clone:ddc27a08, 3' ...   916   0.0    1
(BJ346516) Dictyostelium discoideum cDNA clone:dda24n03, 3' ...   916   0.0    1
(BJ377682) Dictyostelium discoideum cDNA clone:ddc25l07, 3' ...   912   0.0    1
(BJ434123) Dictyostelium discoideum cDNA clone:ddv23o24, 3' ...   902   0.0    1
(BJ433597) Dictyostelium discoideum cDNA clone:ddv22j07, 3' ...   902   0.0    1
(BJ433538) Dictyostelium discoideum cDNA clone:ddv22n06, 3' ...   902   0.0    1
(BJ433417) Dictyostelium discoideum cDNA clone:ddv21e21, 3' ...   902   0.0    1
(BJ432639) Dictyostelium discoideum cDNA clone:ddv19d08, 3' ...   902   0.0    1
(BJ432582) Dictyostelium discoideum cDNA clone:ddv19j01, 3' ...   902   0.0    1
(BJ432483) Dictyostelium discoideum cDNA clone:ddv18g20, 3' ...   902   0.0    1
dna update 2009. 4. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   299   8e-80
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   299   8e-80
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   299   8e-80
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   297   3e-79
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   297   3e-79
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   283   3e-75
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526...   283   3e-75
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   283   3e-75
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   283   5e-75
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   283   5e-75
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL715 is

5' end seq. ID AFL715F
5' end seq. 
>AFL715F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNCTTTTTTGAAAAAAAAAAXX
XXXXXXXX
Length of 5' end seq. 128
3' end seq. ID AFL715Z
3' end seq. 
>AFL715Z.Seq
XXXXXXXXXXANNNNNGNNTNNNNNNNNNNNNNNNNNNNNNNNTTTNNNNTGGTNNNNNN
TTNNNNNANGNTNGNNNTNTNTNNNNTNNNAANANNNANAAANNANNNNNTNTNNNNTTG
GTCNTNANATTAANAGNTGGTATNNNNATNTTTGTNANANCATTNNNTGGTAANNCNATC
NNTNTTNAAGTTNAGGGTCANATAATATTNNNAATGTTAAANCAAANATTCAAGNCAAAN
AAGGTATCCCNCCAGNCCANCAAAGATTAATTTTNGNTGGTAANCAANTAGAAGATGGTN
GTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAA
GAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTG
AAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCAC
CAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTG
ATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGC
AAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACA
ACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTAT
Length of 3' end seq. 703
Connected seq. ID AFL715P
Connected seq. 
>AFL715P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNCTTTTTTGAAAAAAAAAA--
--------ANNNNNGNNTNNNNNNNNNNNNNNNNNNNNNNNTTTNNNNTGGTNNNNNNTT
NNNNNANGNTNGNNNTNTNTNNNNTNNNAANANNNANAAANNANNNNNTNTNNNNTTGGT
CNTNANATTAANAGNTGGTATNNNNATNTTTGTNANANCATTNNNTGGTAANNCNATCNN
TNTTNAAGTTNAGGGTCANATAATATTNNNAATGTTAAANCAAANATTCAAGNCAAANAA
GGTATCCCNCCAGNCCANCAAAGATTAATTTTNGNTGGTAANCAANTAGAAGATGGTNGT
ACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGA
GGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAA
GGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCA
GATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGAT
TACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAA
ATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAAC
ATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTAT
Length of connected seq. 811
Full length Seq ID -
Full length Seq. -
Length of full length seq. -