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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL661
Library SS
(Link to library)
Clone ID SSL661
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10114-1
Original site URL
Representative seq. ID SSL661Z
(Link to Original site)
Representative DNA sequence 
>SSL661 (SSL661Q) /CSM/SS/SSL6-C/SSL661Q.Seq.d/
XXXXXXXXXXTGGCCCCACTAATATTGACCGTATTAACACCATGGTAATAGAGATGGTCA
TACAAATTCCATGCACCAAGGTGTCAACCTGACAGAGTTCAAAAACCTTTATAGAATGTC
ACCTATATTAAAGGCACATATAAGTCTTGGTTCAGTAGATTGTATCAATGCTCCAAAGAT
ATCCCCCGTTTTGAAATTACTGCATACCCACATTGAATTCTTATCCAATGGCCAGTTATT
TGCATTCCAGGGAGAGAGACCCATTGAACATATAGTTCATTCTTGCAAGCTGGTTATAAA
AAGATGTGGTGGCTATGCCTTATCCATTGATTGATCAACAAGAGATCTTAAAGAGACAAT
TGGAACTTCAATATTCTCGTGAAGGTATGTCACAAGAACAAATTGATCAAATGGAAAAAC
AAATTAAAGAGAAACAACAAGAATATGAAATTAAAAGAAATGCTAGAAAATATTTAGAAG
TTGAACATGATCATGATGAAGAAAAAGAAATTGCTGAATATAAAGAACGAATTAAATAAT
AGAAAATCACATCAATGCTGTATATACTAGAAGTTCACGTTAAGGACCAGCTAAAGTCTT
TGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGATAGAATCAATTTTAGATTCAA
AAATTGCTTATCTTTTATTTGGTAGTATTTCAACTGGTTTATTCTTTATCATTAAAAAAA
GAATTTCTAAAAAATCAAAATTTATGAAAATTGCTTAAGGAAATAGTTATTTTTTTTTTT
AGGGAAATTAGAAAAAAAAAAAAAAA
sequence update 1998. 1.25
Translated Amino Acid sequence 
---ph*y*py*HHGNRDGHTNSMHQGVNLTEFKNLYRMSPILKAHISLGSVDCINAPKIS
PVLKLLHTHIEFLSNGQLFAFQGERPIEHIVHSCKLVIKRCGGYALSID*strdlketig
tsifs*ryvtrtn*sngktn*rettri*n*kkc*kifrs*t*s**rkrnc*i*rtn*iie
nhinavytrssr*gpakvfansmfedvdsdddrinfrfknclsfiw*yfnwfilyh*kkn
f*kikiyenclrk*lffflgklekkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---gptnidrintmviemviqipctkvst*qssktfiechly*rhi*vlvq*ivsmlqry
ppf*nyciptlnsypmasylhsrerdplni*filaswl*kdvvampyplidqqeilkrql
elqysregmsqeqidqmekqikekqqeyeikrnarkylevehdhdeekeiaeykerik**
kitsmlyilevhvkdqlkslptqclkmwilmmiesildskiayllfgsistglffiikkr
iskkskfmkia*gnsyfff*gn*kkkkk


Frame B:
---apliltvltpw**rwsykfhaprcqpdrvqkpl*nvtyikgtykswfsrlyqcskdi
prfeitayph*iliqwpvicipgreth*tyssflqagykkmwwlclih*linkrs*rdnw
nfnilvkvchknklikwknklkrnnknmklkemleni*klnmimmkkkkllniknelnnr
kshqcciy*kftlrts*slcqlnv*rcgf****nqf*iqkllifylvvfqlvyslslkke
flknqnl*kllkeivifffreirkkkk


Frame C:
---ph*y*py*HHGNRDGHTNSMHQGVNLTEFKNLYRMSPILKAHISLGSVDCINAPKIS
PVLKLLHTHIEFLSNGQLFAFQGERPIEHIVHSCKLVIKRCGGYALSID*strdlketig
tsifs*ryvtrtn*sngktn*rettri*n*kkc*kifrs*t*s**rkrnc*i*rtn*iie
nhinavytrssr*gpakvfansmfedvdsdddrinfrfknclsfiw*yfnwfilyh*kkn
f*kikiyenclrk*lffflgklekkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL661 (SSL661Q) /CSM/SS/SSL6-C/SSL661Q.Seq.d/                       1463   0.0
SSD473 (SSD473Q) /CSM/SS/SSD4-D/SSD473Q.Seq.d/                        640   0.0
SSK234 (SSK234Q) /CSM/SS/SSK2-B/SSK234Q.Seq.d/                        622   e-177
SSD470 (SSD470Q) /CSM/SS/SSD4-C/SSD470Q.Seq.d/                        569   e-161
SSM715 (SSM715Q) /CSM/SS/SSM7-A/SSM715Q.Seq.d/                        513   e-144
SFH833 (SFH833Q) /CSM/SF/SFH8-B/SFH833Q.Seq.d/                        472   e-132
SSM169 (SSM169Q) /CSM/SS/SSM1-C/SSM169Q.Seq.d/                        440   e-122
FC-IC0651 (FC-IC0651Q) /CSM/FC-IC/FC-IC0651Q.Seq.d/                   216   4e-55
VSF743 (VSF743Q) /CSM/VS/VSF7-B/VSF743Q.Seq.d/                        101   2e-20
SSM568 (SSM568Q) /CSM/SS/SSM5-C/SSM568Q.Seq.d/                        101   2e-20
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   460  0.0  8
AJ297597|AJ297597.1 Dictyostelium discoideum mRNA for calcium-binding protein 4a (cbpD1  gene).   105  8e-19  1
AJ297598|AJ297598.1 Dictyostelium discoideum cbpD2 gene for calcium-binding protein 4b,  exons 1-4.    94  3e-15  1
AX300904|AX300904.1 Sequence 10 from Patent WO0185989.            54  0.003  1
AZ541042|AZ541042.1 ENTEV41TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.008  3
Z75550|Z75550.1 Caenorhabditis elegans cosmid T22C1.              38  0.16  3
AP003692|AP003692.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1608C10, complete sequence.    38  0.30  8
AL021767|AL021767.1 S.pombe chromosome II cosmid c16C6.           46  0.44  3
AC092276|AC092276.2 Homo sapiens chromosome 5 clone CTD-2010P7, complete sequence.    40  0.47  4
U03641|U03641.1 Borrelia burgdorferi Ip21 circular plasmid, complete sequence.    46  0.53  2
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    43   0.010
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     40   0.089
protein update 2009. 2. 3
PSORT 

 psg: 0.74  gvh: 0.51  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for SSL661 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL661Z
3' end seq. 
>SSL661Z.Seq
----------TGGCCCCACTAATATTGACCGTATTAACACCATGGTAATAGAGATGGTCA
TACAAATTCCATGCACCAAGGTGTCAACCTGACAGAGTTCAAAAACCTTTATAGAATGTC
ACCTATATTAAAGGCACATATAAGTCTTGGTTCAGTAGATTGTATCAATGCTCCAAAGAT
ATCCCCCGTTTTGAAATTACTGCATACCCACATTGAATTCTTATCCAATGGCCAGTTATT
TGCATTCCAGGGAGAGAGACCCATTGAACATATAGTTCATTCTTGCAAGCTGGTTATAAA
AAGATGTGGTGGCTATGCCTTATCCATTGATTGATCAACAAGAGATCTTAAAGAGACAAT
TGGAACTTCAATATTCTCGTGAAGGTATGTCACAAGAACAAATTGATCAAATGGAAAAAC
AAATTAAAGAGAAACAACAAGAATATGAAATTAAAAGAAATGCTAGAAAATATTTAGAAG
TTGAACATGATCATGATGAAGAAAAAGAAATTGCTGAATATAAAGAACGAATTAAATAAT
AGAAAATCACATCAATGCTGTATATACTAGAAGTTCACGTTAAGGACCAGCTAAAGTCTT
TGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGATAGAATCAATTTTAGATTCAA
AAATTGCTTATCTTTTATTTGGTAGTATTTCAACTGGTTTATTCTTTATCATTAAAAAAA
GAATTTCTAAAAAATCAAAATTTATGAAAATTGCTTAAGGAAATAGTTATTTTTTTTTTT
AGGGAAATTAGAAAAAAAAAAAAAAA
Length of 3' end seq. 796
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -