SSL661
Library SS
(Link to library)
Clone ID SSL661
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10114-1
Original site URL
Representative seq. ID SSL661Z
(Link to Original site)
Representative DNA sequence
>SSL661 (SSL661Q) /CSM/SS/SSL6-C/SSL661Q.Seq.d/
XXXXXXXXXXTGGCCCCACTAATATTGACCGTATTAACACCATGGTAATAGAGATGGTCA
TACAAATTCCATGCACCAAGGTGTCAACCTGACAGAGTTCAAAAACCTTTATAGAATGTC
ACCTATATTAAAGGCACATATAAGTCTTGGTTCAGTAGATTGTATCAATGCTCCAAAGAT
ATCCCCCGTTTTGAAATTACTGCATACCCACATTGAATTCTTATCCAATGGCCAGTTATT
TGCATTCCAGGGAGAGAGACCCATTGAACATATAGTTCATTCTTGCAAGCTGGTTATAAA
AAGATGTGGTGGCTATGCCTTATCCATTGATTGATCAACAAGAGATCTTAAAGAGACAAT
TGGAACTTCAATATTCTCGTGAAGGTATGTCACAAGAACAAATTGATCAAATGGAAAAAC
AAATTAAAGAGAAACAACAAGAATATGAAATTAAAAGAAATGCTAGAAAATATTTAGAAG
TTGAACATGATCATGATGAAGAAAAAGAAATTGCTGAATATAAAGAACGAATTAAATAAT
AGAAAATCACATCAATGCTGTATATACTAGAAGTTCACGTTAAGGACCAGCTAAAGTCTT
TGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGATAGAATCAATTTTAGATTCAA
AAATTGCTTATCTTTTATTTGGTAGTATTTCAACTGGTTTATTCTTTATCATTAAAAAAA
GAATTTCTAAAAAATCAAAATTTATGAAAATTGCTTAAGGAAATAGTTATTTTTTTTTTT
AGGGAAATTAGAAAAAAAAAAAAAAA
sequence update 1998. 1.25
Translated Amino Acid sequence
---ph*y*py*HHGNRDGHTNSMHQGVNLTEFKNLYRMSPILKAHISLGSVDCINAPKIS
PVLKLLHTHIEFLSNGQLFAFQGERPIEHIVHSCKLVIKRCGGYALSID*strdlketig
tsifs*ryvtrtn*sngktn*rettri*n*kkc*kifrs*t*s**rkrnc*i*rtn*iie
nhinavytrssr*gpakvfansmfedvdsdddrinfrfknclsfiw*yfnwfilyh*kkn
f*kikiyenclrk*lffflgklekkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---gptnidrintmviemviqipctkvst*qssktfiechly*rhi*vlvq*ivsmlqry
ppf*nyciptlnsypmasylhsrerdplni*filaswl*kdvvampyplidqqeilkrql
elqysregmsqeqidqmekqikekqqeyeikrnarkylevehdhdeekeiaeykerik**
kitsmlyilevhvkdqlkslptqclkmwilmmiesildskiayllfgsistglffiikkr
iskkskfmkia*gnsyfff*gn*kkkkk


Frame B:
---apliltvltpw**rwsykfhaprcqpdrvqkpl*nvtyikgtykswfsrlyqcskdi
prfeitayph*iliqwpvicipgreth*tyssflqagykkmwwlclih*linkrs*rdnw
nfnilvkvchknklikwknklkrnnknmklkemleni*klnmimmkkkkllniknelnnr
kshqcciy*kftlrts*slcqlnv*rcgf****nqf*iqkllifylvvfqlvyslslkke
flknqnl*kllkeivifffreirkkkk


Frame C:
---ph*y*py*HHGNRDGHTNSMHQGVNLTEFKNLYRMSPILKAHISLGSVDCINAPKIS
PVLKLLHTHIEFLSNGQLFAFQGERPIEHIVHSCKLVIKRCGGYALSID*strdlketig
tsifs*ryvtrtn*sngktn*rettri*n*kkc*kifrs*t*s**rkrnc*i*rtn*iie
nhinavytrssr*gpakvfansmfedvdsdddrinfrfknclsfiw*yfnwfilyh*kkn
f*kikiyenclrk*lffflgklekkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL661 (SSL661Q) /CSM/SS/SSL6-C/SSL661Q.Seq.d/ 1463 0.0
SSD473 (SSD473Q) /CSM/SS/SSD4-D/SSD473Q.Seq.d/ 640 0.0
SSK234 (SSK234Q) /CSM/SS/SSK2-B/SSK234Q.Seq.d/ 622 e-177
SSD470 (SSD470Q) /CSM/SS/SSD4-C/SSD470Q.Seq.d/ 569 e-161
SSM715 (SSM715Q) /CSM/SS/SSM7-A/SSM715Q.Seq.d/ 513 e-144
SFH833 (SFH833Q) /CSM/SF/SFH8-B/SFH833Q.Seq.d/ 472 e-132
SSM169 (SSM169Q) /CSM/SS/SSM1-C/SSM169Q.Seq.d/ 440 e-122
FC-IC0651 (FC-IC0651Q) /CSM/FC-IC/FC-IC0651Q.Seq.d/ 216 4e-55
VSF743 (VSF743Q) /CSM/VS/VSF7-B/VSF743Q.Seq.d/ 101 2e-20
SSM568 (SSM568Q) /CSM/SS/SSM5-C/SSM568Q.Seq.d/ 101 2e-20

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 460 0.0 8
AJ297597|AJ297597.1 Dictyostelium discoideum mRNA for calcium-binding protein 4a (cbpD1 gene). 105 8e-19 1
AJ297598|AJ297598.1 Dictyostelium discoideum cbpD2 gene for calcium-binding protein 4b, exons 1-4. 94 3e-15 1
AX300904|AX300904.1 Sequence 10 from Patent WO0185989. 54 0.003 1
AZ541042|AZ541042.1 ENTEV41TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.008 3
Z75550|Z75550.1 Caenorhabditis elegans cosmid T22C1. 38 0.16 3
AP003692|AP003692.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1608C10, complete sequence. 38 0.30 8
AL021767|AL021767.1 S.pombe chromosome II cosmid c16C6. 46 0.44 3
AC092276|AC092276.2 Homo sapiens chromosome 5 clone CTD-2010P7, complete sequence. 40 0.47 4
U03641|U03641.1 Borrelia burgdorferi Ip21 circular plasmid, complete sequence. 46 0.53 2
dna update 2003. 8.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ... 43 0.010
(Q54RF4) RecName: Full=Calcium-binding protein 4a; 40 0.089

protein update 2009. 2. 3
PSORT

psg: 0.74 gvh: 0.51 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: mitochondrial

>> prediction for SSL661 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL661Z
3' end seq.
>SSL661Z.Seq
----------TGGCCCCACTAATATTGACCGTATTAACACCATGGTAATAGAGATGGTCA
TACAAATTCCATGCACCAAGGTGTCAACCTGACAGAGTTCAAAAACCTTTATAGAATGTC
ACCTATATTAAAGGCACATATAAGTCTTGGTTCAGTAGATTGTATCAATGCTCCAAAGAT
ATCCCCCGTTTTGAAATTACTGCATACCCACATTGAATTCTTATCCAATGGCCAGTTATT
TGCATTCCAGGGAGAGAGACCCATTGAACATATAGTTCATTCTTGCAAGCTGGTTATAAA
AAGATGTGGTGGCTATGCCTTATCCATTGATTGATCAACAAGAGATCTTAAAGAGACAAT
TGGAACTTCAATATTCTCGTGAAGGTATGTCACAAGAACAAATTGATCAAATGGAAAAAC
AAATTAAAGAGAAACAACAAGAATATGAAATTAAAAGAAATGCTAGAAAATATTTAGAAG
TTGAACATGATCATGATGAAGAAAAAGAAATTGCTGAATATAAAGAACGAATTAAATAAT
AGAAAATCACATCAATGCTGTATATACTAGAAGTTCACGTTAAGGACCAGCTAAAGTCTT
TGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGATAGAATCAATTTTAGATTCAA
AAATTGCTTATCTTTTATTTGGTAGTATTTCAACTGGTTTATTCTTTATCATTAAAAAAA
GAATTTCTAAAAAATCAAAATTTATGAAAATTGCTTAAGGAAATAGTTATTTTTTTTTTT
AGGGAAATTAGAAAAAAAAAAAAAAA
Length of 3' end seq. 796
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -