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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL830
Library SS
(Link to library)
Clone ID SSL830
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05298-1
Original site URL
Representative seq. ID SSL830P
(Link to Original site)
Representative DNA sequence 
>SSL830 (SSL830Q) /CSM/SS/SSL8-B/SSL830Q.Seq.d/
AAATATAAAATAAAAACTAAAATATCTTTTATTTTTAAATATTTATAAAATATCAAAAAG
ATATATAAAAAAAAATAAAAAATAAAAAATAAATAATAAAATTGTTGTACTATAAAAAAA
AAATATATATATATATAANNNNNGAAATTAAAAATTGGAATTGCATTATCAGTAATTGTT
TTAGTTTGTTGTATAATTTCTTTTGCATTACCATGGTATCAAATTGAAAAGAAAGAAACT
AAAATACTAGACAAAGTTGTAGTACAATATAGTTGGAAAAAATTCTCATGCCAAACTGAT
GGTGAAGATAAATTAACATTAAATTATGATGATGATGAAATTGATTCAAATTCAATTGCA
ACCAAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTCAGTGTTGATAATATTTCAAAA
ATTTTAAACTCTTCACTTAGTTTCTTGGTAATTGCATCAGCTCTTGCTCTTGGTACTGCT
CTTTTACAATTAATTCTTCTTTTATCACCAAAATTATGCAGATCATGCGTTTGGAAACTT
TTATGTATTGGTTGTTCAATTGCAACCATTGTCATGTTATTCATATCATTCTTTACATTT
TTGGGTGCACCAAAAGCATTCTATGATGATACTGAAGTTCTTAGTGCCAATCTTCTTGGA
GCATGTGAAGAGAGATGGXXXXXXXXXXCTNTTTTCTCTAATGATATTCACACTTCGCAT
TCCTTCTCCGTCATTGGTTTTGGTTGTTGGACTATTTCCTTTGCCTTCCCTTGGTATCCA
TTGNAAGGTCGGTACCTCTATCCTAGCCAAGTTTGTAGTCCATTTTCGTTGGAAATATTT
CTCATGCCATACTGATGGTGCAGTCCATTCACATTCAATTATGCTGATGATGCAATTGAT
TCAAATTCAATTGCAACCAAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTCAGTGTT
GTTAATATTTCAAAAATTTTAACTCTTCCACTTAGTTTCTTGGTAATTGCATCGCTCTTG
CTCTTGGTACGCTCATATCCAAGTAATTCTTCTTTTATCACCCACTTTATGCAGTTCATG
CGTTTGGAACTCCTCTGTACCGAATTGCCCAAGGCTGCCTCTCGTCACGGCCCCCCTCGT
CTCGTACACGACATTTTTGGGTGCCACCAAATACCATCTATGATGATACTGAAGTTCTTA
GTGCCAATCTTCTTGGAGCATGTGAAGAGAGATGTGTGATAAAATTATTGGTGATGACGA
TTATTTCAAATGGTTACCAGGTGGTGGATGGTGGTCAACCTTATGTGGATGTTTTACTGC
TTTGGTAGCTAGTATGTTCACATTCGCTTCTCACAGATAAATAAAAAAATCCCTAAAAGT
ATTTCGCTTTGATTTATTAAAAAAAAAAA
sequence update 1998.12.24
Translated Amino Acid sequence 
kykiktkisfifkyl*nikkiykkk*kiknk**ncctikkkyiyi*XXKLKIGIALSVIV
LVCCIISFALPWYQIEKKETKILDKVVVQYSWKKFSCQTDGEDKLTLNYDDDEIDSNSIA
TKLCVASALVNPLSVDNISKILNSSLSFLVIASALALGTALLQLILLLSPKLCRSCVWKL
LCIGCSIATIVMLFISFFTFLGAPKAFYDDTEVLSANLLGACEERW---

---LFSLMIFTLRIPSPSLVLVVGLFPLPSLGIHXKVGTSILAKFVVHFRWKYFSCHTDG
AVHSHSIMLMMQLIQIQLQPNFVLHQLL*ihsvllifqkf*lfhlvsw*lhrscswyahi
qvilllsptlcsscvwnssvpncprlplvtaplvsyttflgatkyhl**y*ss*cqssws
m*remcdkiigdddyfkwlpgggwwstlcgcftalvasmftfashr*ikkslkvfrfdll
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kykiktkisfifkyl*nikkiykkk*kiknk**ncctikkkyiyi*XXKLKIGIALSVIV
LVCCIISFALPWYQIEKKETKILDKVVVQYSWKKFSCQTDGEDKLTLNYDDDEIDSNSIA
TKLCVASALVNPLSVDNISKILNSSLSFLVIASALALGTALLQLILLLSPKLCRSCVWKL
LCIGCSIATIVMLFISFFTFLGAPKAFYDDTEVLSANLLGACEERW---

---LFSLMIFTLRIPSPSLVLVVGLFPLPSLGIHXKVGTSILAKFVVHFRWKYFSCHTDG
AVHSHSIMLMMQLIQIQLQPNFVLHQLL*ihsvllifqkf*lfhlvsw*lhrscswyahi
qvilllsptlcsscvwnssvpncprlplvtaplvsyttflgatkyhl**y*ss*cqssws
m*remcdkiigdddyfkwlpgggwwstlcgcftalvasmftfashr*ikkslkvfrfdll
kkk

Frame B:
nik*klkyllflniykiskryikknkk*kinnkivvl*kkniyiyxxxn*klelhyq*lf
*fvv*fllhyhgiklkrkklky*tkl*ynivgknshaklmvkin*h*immmmkliqiqlq
pnfvlhqll*ihsvliifqkf*tlhlvsw*lhqllllvllfyn*fffyhqnyadhafgnf
yvlvvqlqplscysyhslhfwvhqkhsmmilkflvpiflehvkrd---

---xfl**yshfafllrhwfwlldyflclplvsixrsvpls*psl*sifvgnishailmv
qsihiqlc**cn*fkfncnqtlccissckstqcc*yfknfnsst*flgncialalgtlis
k*fffyhplyavhafgtplyriaqgclssrppssrtrhfwvppntiyddtevlsanllga
ceercvikllvmtiisngyqvvdggqpyvdvlllw*lvcshslltdk*knp*kyfaliy*
kkk

Frame C:
i*nkn*nifyf*ifikyqkdi*kkiknkk*iikllyykkkiyiyixxeiknwnciisncf
sllynffcitmvsn*kern*ntrqscsti*lekilmpn*w*r*inikl****n*fkfncn
qtlccissckstqc**yfknfklft*flgncisscswycsftinssfitkimqimrletf
mywlfncnhchvihiilyifgctksil**y*ss*cqsswsm*rem---

---xfsndihtshsfsvigfgcwtisfafpwyplxgrylypsqvcspfsleiflmpy*wc
spftfnyaddaidsnsiatklcvasalvnplsvvniskiltlplsflviasllllvrsyp
snssfithfmqfmrlellctelpkaasrhgpprlvhdifgchqipsmmilkflvpifleh
vkrdv**nyw**rlfqmvtrwwmvvnlmwmfycfgs*yvhirfsqinkkipksisl*fik
kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL830 (SSL830Q) /CSM/SS/SSL8-B/SSL830Q.Seq.d/                       2375   0.0
VSD767 (VSD767Q) /CSM/VS/VSD7-C/VSD767Q.Seq.d/                       1061   0.0
VSJ781 (VSJ781Q) /CSM/VS/VSJ7-D/VSJ781Q.Seq.d/                       1049   0.0
VSH348 (VSH348Q) /CSM/VS/VSH3-B/VSH348Q.Seq.d/                       1049   0.0
VSG873 (VSG873Q) /CSM/VS/VSG8-D/VSG873Q.Seq.d/                        694   0.0
SSG863 (SSG863Q) /CSM/SS/SSG8-C/SSG863Q.Seq.d/                        676   0.0
SSL815 (SSL815Q) /CSM/SS/SSL8-A/SSL815Q.Seq.d/                        389   e-107
VFL390 (VFL390Q) /CSM/VF/VFL3-D/VFL390Q.Seq.d/                         42   0.023
VFK875 (VFK875Q) /CSM/VF/VFK8-D/VFK875Q.Seq.d/                         42   0.023
VFJ309 (VFJ309Q) /CSM/VF/VFJ3-A/VFJ309Q.Seq.d/                         42   0.023
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC074119|AC074119.5 Homo sapiens BAC clone RP11-573B16 from 7, complete sequence.    36  0.24  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.82  9
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    36  1.1  9
BX467499|BX467499.1 Anopheles gambiae EST, clone NAP1-P124-G-12-5.    46  1.2  1
AL933383|AL933383.1 Anopheles gambiae EST, clone NAP1-P106-D-01-5.    46  1.2  1
BX621584|BX621584.1 Anopheles gambiae EST, clone ANGNP1113C09T7.    46  1.2  1
AZ931344|AZ931344.1 474.dhz64g11.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz64g11.s1, DNA sequence.    46  1.2  1
BX607667|BX607667.1 Anopheles gambiae EST, clone AGCC163TR.       46  1.2  1
BY619515|BY619515.1 Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K330045D24, 3' end partial sequence.    46  1.2  1
CC329841|CC329841.1 OGPBF47TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0357H22, DNA sequence.    34  1.8  2
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928158_503(CU928158|pid:none) Escherichia fergusonii ATCC 3546...    38   0.77
CP000859_974(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...    35   8.6
protein update 2009. 6.15
PSORT 

 psg: 0.98  gvh: 0.70  alm: 0.21  top: 0.40  tms: 0.20  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SSL830 is end
5' end seq. ID SSL830F
5' end seq. 
>SSL830F.Seq
AAATATAAAATAAAAACTAAAATATCTTTTATTTTTAAATATTTATAAAATATCAAAAAG
ATATATAAAAAAAAATAAAAAATAAAAAATAAATAATAAAATTGTTGTACTATAAAAAAA
AAATATATATATATATAANNNNNGAAATTAAAAATTGGAATTGCATTATCAGTAATTGTT
TTAGTTTGTTGTATAATTTCTTTTGCATTACCATGGTATCAAATTGAAAAGAAAGAAACT
AAAATACTAGACAAAGTTGTAGTACAATATAGTTGGAAAAAATTCTCATGCCAAACTGAT
GGTGAAGATAAATTAACATTAAATTATGATGATGATGAAATTGATTCAAATTCAATTGCA
ACCAAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTCAGTGTTGATAATATTTCAAAA
ATTTTAAACTCTTCACTTAGTTTCTTGGTAATTGCATCAGCTCTTGCTCTTGGTACTGCT
CTTTTACAATTAATTCTTCTTTTATCACCAAAATTATGCAGATCATGCGTTTGGAAACTT
TTATGTATTGGTTGTTCAATTGCAACCATTGTCATGTTATTCATATCATTCTTTACATTT
TTGGGTGCACCAAAAGCATTCTATGATGATACTGAAGTTCTTAGTGCCAATCTTCTTGGA
GCATGTGAAGAGAGATGG----------
Length of 5' end seq. 678
3' end seq. ID SSL830Z
3' end seq. 
>SSL830Z.Seq
----------CTNTTTTCTCTAATGATATTCACACTTCGCATTCCTTCTCCGTCATTGGT
TTTGGTTGTTGGACTATTTCCTTTGCCTTCCCTTGGTATCCATTGNAAGGTCGGTACCTC
TATCCTAGCCAAGTTTGTAGTCCATTTTCGTTGGAAATATTTCTCATGCCATACTGATGG
TGCAGTCCATTCACATTCAATTATGCTGATGATGCAATTGATTCAAATTCAATTGCAACC
AAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTCAGTGTTGTTAATATTTCAAAAATT
TTAACTCTTCCACTTAGTTTCTTGGTAATTGCATCGCTCTTGCTCTTGGTACGCTCATAT
CCAAGTAATTCTTCTTTTATCACCCACTTTATGCAGTTCATGCGTTTGGAACTCCTCTGT
ACCGAATTGCCCAAGGCTGCCTCTCGTCACGGCCCCCCTCGTCTCGTACACGACATTTTT
GGGTGCCACCAAATACCATCTATGATGATACTGAAGTTCTTAGTGCCAATCTTCTTGGAG
CATGTGAAGAGAGATGTGTGATAAAATTATTGGTGATGACGATTATTTCAAATGGTTACC
AGGTGGTGGATGGTGGTCAACCTTATGTGGATGTTTTACTGCTTTGGTAGCTAGTATGTT
CACATTCGCTTCTCACAGATAAATAAAAAAATCCCTAAAAGTATTTCGCTTTGATTTATT
AAAAAAAAAAA
Length of 3' end seq. 721
Connected seq. ID SSL830P
Connected seq. 
>SSL830P.Seq
AAATATAAAATAAAAACTAAAATATCTTTTATTTTTAAATATTTATAAAATATCAAAAAG
ATATATAAAAAAAAATAAAAAATAAAAAATAAATAATAAAATTGTTGTACTATAAAAAAA
AAATATATATATATATAANNNNNGAAATTAAAAATTGGAATTGCATTATCAGTAATTGTT
TTAGTTTGTTGTATAATTTCTTTTGCATTACCATGGTATCAAATTGAAAAGAAAGAAACT
AAAATACTAGACAAAGTTGTAGTACAATATAGTTGGAAAAAATTCTCATGCCAAACTGAT
GGTGAAGATAAATTAACATTAAATTATGATGATGATGAAATTGATTCAAATTCAATTGCA
ACCAAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTCAGTGTTGATAATATTTCAAAA
ATTTTAAACTCTTCACTTAGTTTCTTGGTAATTGCATCAGCTCTTGCTCTTGGTACTGCT
CTTTTACAATTAATTCTTCTTTTATCACCAAAATTATGCAGATCATGCGTTTGGAAACTT
TTATGTATTGGTTGTTCAATTGCAACCATTGTCATGTTATTCATATCATTCTTTACATTT
TTGGGTGCACCAAAAGCATTCTATGATGATACTGAAGTTCTTAGTGCCAATCTTCTTGGA
GCATGTGAAGAGAGATGG----------CTNTTTTCTCTAATGATATTCACACTTCGCAT
TCCTTCTCCGTCATTGGTTTTGGTTGTTGGACTATTTCCTTTGCCTTCCCTTGGTATCCA
TTGNAAGGTCGGTACCTCTATCCTAGCCAAGTTTGTAGTCCATTTTCGTTGGAAATATTT
CTCATGCCATACTGATGGTGCAGTCCATTCACATTCAATTATGCTGATGATGCAATTGAT
TCAAATTCAATTGCAACCAAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTCAGTGTT
GTTAATATTTCAAAAATTTTAACTCTTCCACTTAGTTTCTTGGTAATTGCATCGCTCTTG
CTCTTGGTACGCTCATATCCAAGTAATTCTTCTTTTATCACCCACTTTATGCAGTTCATG
CGTTTGGAACTCCTCTGTACCGAATTGCCCAAGGCTGCCTCTCGTCACGGCCCCCCTCGT
CTCGTACACGACATTTTTGGGTGCCACCAAATACCATCTATGATGATACTGAAGTTCTTA
GTGCCAATCTTCTTGGAGCATGTGAAGAGAGATGTGTGATAAAATTATTGGTGATGACGA
TTATTTCAAATGGTTACCAGGTGGTGGATGGTGGTCAACCTTATGTGGATGTTTTACTGC
TTTGGTAGCTAGTATGTTCACATTCGCTTCTCACAGATAAATAAAAAAATCCCTAAAAGT
ATTTCGCTTTGATTTATTAAAAAAAAAAA
Length of connected seq. 1399
Full length Seq ID -
Full length Seq. -
Length of full length seq. -