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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFC161
Library VF
(Link to library)
Clone ID VFC161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID VFC161P
(Link to Original site)
Representative DNA sequence 
>VFC161 (VFC161Q) /CSM/VF/VFC1-C/VFC161Q.Seq.d/
CTGTTGGCCTACTGGNAATTGTCACCTGNACTTACATAAAAGNAAAATGAAATTACTTAT
TTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTT
CCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATC
TGCTCTCAATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGG
TGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTAGTTCATC
CAACTTGTGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAA
CAAATATAACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCA
ATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATT
AACTGTTAAAGATCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTT
CGCCAAATTCGATGGTATTTTAGGXXXXXXXXXXACTCTCATTCGGTTCAATCGATAACA
CCAAATACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTCG
TTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACG
CAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCA
ATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTA
TCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAA
AAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGG
GTATCGAGTTAAACATGGGAAATTTCTGGACCCTTGGTGATGTTTTCATCTCTGCTTACT
ATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTNCAAGGTTAA
ATTTTTTTAATTAATTTATATTTAAGCATAGAATAAAACTAAATAATAGNAACAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
CWPTGNCHLXLHKXKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLS
ALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTSSSNLWIPSKKCPITVVACDLHN
KYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDF
AKFDGIL---

---LSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSL
IAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTE
FGKTECLSGFMGIELNMGNFWTLGDVFISAYYTVFDFGNKQVGFATAIXRLNFFN*fifk
hriklnnxnn
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxlspxlt*kxneityfnfifsyycfsssfnstiklpssfkri*kksstkmvkqii
csqcwyhnpnfrf*rcsilwchyhwyprsslqssfry*fiqlvdsikemsnhcccm*ft*
qi*qrclkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsiir*shcrtrycfrf
rqirwyfr---

---tlirfnr*hqihw*hylrpinqrnllgiryg*lcyrwsiswflwyylsrnlrfryit
hcwsng*yycpq*kircchlkw*rcll*l*ryqhltkcyhhrcws*icfnskrirfrsy*
vrkd*mfewiygyrvkhgkfldpw*cfhlcllycirfw**tswfrnchxkvkff*liyi*
a*nktk**xq

Frame B:
CWPTGNCHLXLHKXKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLS
ALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTSSSNLWIPSKKCPITVVACDLHN
KYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDF
AKFDGIL---

---LSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSL
IAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTE
FGKTECLSGFMGIELNMGNFWTLGDVFISAYYTVFDFGNKQVGFATAIXRLNFFN*fifk
hriklnnxnn

Frame C:
vgllxivtxtyikxk*nylf*lyf*lllf*lkl*qyh*tsiklqenleeefhkngqtdyl
lsmlvpqsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyit
nitavpqahmsptelispsntvvvlcqvlslkipsllvh*llkinyslkplpnqvllsis
pnsmvf*---

---shsvqsitpntlvtlptsh*ptkpignslwmtllsmvnqlvsvvllvtqfaiqvhhs
llvqwlillpsmkn*vlss*mvkvsslivalstpyqmlpspllvvnlf*lqkntf*klls
serlnv*vdlwvss*tweisgplvmfsslltilysilvinklvsqlpxqg*iflinlyls
ie*n*iixt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC161 (VFC161Q) /CSM/VF/VFC1-C/VFC161Q.Seq.d/                       2121   0.0
VFL734 (VFL734Q) /CSM/VF/VFL7-B/VFL734Q.Seq.d/                       1072   0.0
VFL156 (VFL156Q) /CSM/VF/VFL1-C/VFL156Q.Seq.d/                       1072   0.0
VFK585 (VFK585Q) /CSM/VF/VFK5-D/VFK585Q.Seq.d/                       1065   0.0
VFM571 (VFM571Q) /CSM/VF/VFM5-C/VFM571Q.Seq.d/                       1063   0.0
VFL574 (VFL574Q) /CSM/VF/VFL5-D/VFL574Q.Seq.d/                       1063   0.0
VFL359 (VFL359Q) /CSM/VF/VFL3-C/VFL359Q.Seq.d/                       1063   0.0
VFL310 (VFL310Q) /CSM/VF/VFL3-A/VFL310Q.Seq.d/                       1063   0.0
VFK779 (VFK779Q) /CSM/VF/VFK7-D/VFK779Q.Seq.d/                       1063   0.0
VFI679 (VFI679Q) /CSM/VF/VFI6-D/VFI679Q.Seq.d/                       1063   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D.  1025  0.0  5
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2.   975  0.0  6
E33916|E33916.1 Candida boidinii strain with lowered protease activity and  utilization thereof as host for producing foreign protein.    36  2e-06  5
AL765461|AL765461.1 Arabidopsis thaliana T-DNA flanking sequence GK-139E08-012875.    62  2e-05  1
AL762930|AL762930.1 Arabidopsis thaliana T-DNA flanking sequence GK-030C11-011522.    62  2e-05  1
AV567523|AV567523.1 Arabidopsis thaliana cDNA clone:SQL15g03F, 3' end.    62  2e-05  1
AF372974|AF372974.1 Arabidopsis thaliana AT4g04460/T26N6_7 mRNA, complete cds.    62  2e-05  1
CB264640|CB264640.1 48-E014661-035-002-P12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000P122Q 5-PRIME, mRNA sequence.    62  2e-05  1
BE525959|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence.    62  2e-05  1
CD825453|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence.    62  2e-05  1
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c...   176   1e-83
AF420068_1(AF420068|pid:none) Clonorchis sinensis aspartic prote...   162   6e-80
BC072252_1(BC072252|pid:none) Xenopus laevis MGC82347 protein, m...   160   1e-73
BC154877_1(BC154877|pid:none) Xenopus tropicalis hypothetical pr...   156   1e-71
BC096630_1(BC096630|pid:none) Xenopus tropicalis hypothetical pr...   156   1e-71
BC154324_1(BC154324|pid:none) Danio rerio zgc:63831, mRNA (cDNA ...   154   1e-70
BC056836_1(BC056836|pid:none) Danio rerio zgc:63831, mRNA (cDNA ...   154   2e-70
AK159580_1(AK159580|pid:none) Mus musculus osteoclast-like cell ...   147   4e-69
AK151276_1(AK151276|pid:none) Mus musculus bone marrow macrophag...   147   4e-69
AK159209_1(AK159209|pid:none) Mus musculus osteoclast-like cell ...   147   4e-69
protein update 2009. 6.17
PSORT 

 psg: 0.77  gvh: 0.77  alm: 0.21  top: 0.57  tms: 0.07  mit: 0.30  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VFC161 is nuc
5' end seq. ID VFC161F
5' end seq. 
>VFC161F.Seq
CTGTTGGCCTACTGGNAATTGTCACCTGNACTTACATAAAAGNAAAATGAAATTACTTAT
TTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTT
CCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATC
TGCTCTCAATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGG
TGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTAGTTCATC
CAACTTGTGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAA
CAAATATAACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCA
ATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATT
AACTGTTAAAGATCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTT
CGCCAAATTCGATGGTATTTTAGG----------
Length of 5' end seq. 564
3' end seq. ID VFC161Z
3' end seq. 
>VFC161Z.Seq
----------ACTCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCT
ACGTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATG
GTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCAC
TCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCT
TAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCA
TCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTG
AGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATT
TCTGGACCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATA
AACAAGTTGGTTTCGCAACTGCCATTNCAAGGTTAAATTTTTTTAATTAATTTATATTTA
AGCATAGAATAAAACTAAATAATAGNAACAAT
Length of 3' end seq. 562
Connected seq. ID VFC161P
Connected seq. 
>VFC161P.Seq
CTGTTGGCCTACTGGNAATTGTCACCTGNACTTACATAAAAGNAAAATGAAATTACTTAT
TTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTT
CCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATC
TGCTCTCAATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGG
TGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTAGTTCATC
CAACTTGTGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAA
CAAATATAACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCA
ATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATT
AACTGTTAAAGATCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTT
CGCCAAATTCGATGGTATTTTAGG----------ACTCTCATTCGGTTCAATCGATAACA
CCAAATACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTCG
TTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACG
CAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCA
ATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTA
TCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAA
AAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGG
GTATCGAGTTAAACATGGGAAATTTCTGGACCCTTGGTGATGTTTTCATCTCTGCTTACT
ATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTNCAAGGTTAA
ATTTTTTTAATTAATTTATATTTAAGCATAGAATAAAACTAAATAATAGNAACAAT
Length of connected seq. 1126
Full length Seq ID -
Full length Seq. -
Length of full length seq. -