VFC221
Library VF
(Link to library)
Clone ID VFC221
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09438-1
Original site URL
Representative seq. ID VFC221Z
(Link to Original site)
Representative DNA sequence
>VFC221 (VFC221Q) /CSM/VF/VFC2-A/VFC221Q.Seq.d/
XXXXXXXXXXACAATGGTGACTATTTCCCATTATGGGGAACATGCATGGGATTCCAAGAG
TTGGCATTATTATCAGCAGACAATTTCAATTTACTCTCATCCTACAATTCAGAAAACTAC
ACTGTACCATTAAACTTCACATCATTAGCAGCCGGTAGTAGATTATTCTCATTGGCATCA
TCAAGCATTATGCAATCATTAGCAAGCGAACCAATTACAATGAATAATCATCAATTTGGT
TTATCACCACAAACCTATCAACAAACATCATCAATCAATACTTTCTTTGATGTTTTATCA
ACCAATGTAGATCGTGATGGTAATACCTTTATCTCTACCATCGAGGCAAAGAACTATCCA
ATCTATGGTACTCAATGGCATCCAGAGAAACCAATTTTCGAATGGTGGGATCAAGAAGTA
ATGAATCATTCATTCGACTCAATCATGGCCAATCAATACACTTCAAACTTTTTCGTTAAT
GAATGTAGAAAATCACTTCACTCTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---NGDYFPLWGTCMGFQELALLSADNFNLLSSYNSENYTVPLNFTSLAAGSRLFSLASS
SIMQSLASEPITMNNHQFGLSPQTYQQTSSINTFFDVLSTNVDRDGNTFISTIEAKNYPI
YGTQWHPEKPIFEWWDQEVMNHSFDSIMANQYTSNFFVNECRKSLHS


Translated Amino Acid sequence (All Frames)
Frame A:
---qw*lfpimgnmhgiprvgiiisrqfqftlilqfrklhctiklhiissr**iiligii
khyaiiskrtnyne*ssiwfittnlstniinqyfl*cfinqcrs*w*ylylyhrgkelsn
lwysmasretnfrmvgsrsnesfirlnhgqsihfklfr**m*kitslf


Frame B:
---NGDYFPLWGTCMGFQELALLSADNFNLLSSYNSENYTVPLNFTSLAAGSRLFSLASS
SIMQSLASEPITMNNHQFGLSPQTYQQTSSINTFFDVLSTNVDRDGNTFISTIEAKNYPI
YGTQWHPEKPIFEWWDQEVMNHSFDSIMANQYTSNFFVNECRKSLHS


Frame C:
---mvtishygehawdskswhyyqqtisiyshptiqkttlyh*tshh*qpvvdyshwhhq
alcnh*qanqlq*iiinlvyhhkpinkhhqsilslmfyqpm*ivmviplslpsrqrtiqs
mvlngiqrnqfsnggikk**iihstqswpintlqtfslmnvenhftl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC221 (VFC221Q) /CSM/VF/VFC2-A/VFC221Q.Seq.d/ 983 0.0
VFN417 (VFN417Q) /CSM/VF/VFN4-A/VFN417Q.Seq.d/ 975 0.0
VFK141 (VFK141Q) /CSM/VF/VFK1-B/VFK141Q.Seq.d/ 967 0.0
VSJ794 (VSJ794Q) /CSM/VS/VSJ7-D/VSJ794Q.Seq.d/ 955 0.0
SSJ116 (SSJ116Q) /CSM/SS/SSJ1-A/SSJ116Q.Seq.d/ 581 e-165
SSJ121 (SSJ121Q) /CSM/SS/SSJ1-A/SSJ121Q.Seq.d/ 339 2e-92
VSE226 (VSE226Q) /CSM/VS/VSE2-B/VSE226Q.Seq.d/ 40 0.032
SSG302 (SSG302Q) /CSM/SS/SSG3-A/SSG302Q.Seq.d/ 40 0.032
SLG828 (SLG828Q) /CSM/SL/SLG8-B/SLG828Q.Seq.d/ 40 0.032
SLG521 (SLG521Q) /CSM/SL/SLG5-A/SLG521Q.Seq.d/ 40 0.032

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP001861|AP001861.1 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2136P7, WORKING DRAFT SEQUENCE, unordered pieces. 44 1.6 1
AL161572|AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68. 32 2.1 6
AC079370|AC079370.2 Mus musculus chromosome 12 clone RP23-34L6 strain C57BL6/J, WORKING DRAFT SEQUENCE, 19 unordered pieces. 42 6.5 1
AC131782|AC131782.2 Mus musculus chromosome UNK clone RP24-361A10, WORKING DRAFT SEQUENCE, 2 unordered pieces. 42 6.5 1
AE017006|AE017006.1 Bacillus cereus ATCC 14579 section 9 of 18 of the complete genome. 34 9.2 6
AC058823|AC058823.4 Homo sapiens BAC clone RP11-810D13 from 4, complete sequence. 44 9.5 2
AC104622|AC104622.3 Homo sapiens BAC clone RP11-481L3 from 2, complete sequence. 36 9.6 3
AF399011|AF399011.1 Pseudomonas phage phiKZ, complete genome. 44 1115 6

dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54HL4) RecName: Full=Gamma-glutamyl hydrolase B; EC=3... 206 3e-52
BC108438_1(BC108438|pid:none) Xenopus laevis hypothetical LOC496... 164 9e-40
BC076459_1(BC076459|pid:none) Danio rerio hypothetical protein L... 155 7e-37
BC093328_1(BC093328|pid:none) Danio rerio hypothetical protein L... 155 7e-37
BC154502_1(BC154502|pid:none) Danio rerio hypothetical protein L... 155 7e-37
BC074274_1(BC074274|pid:none) Xenopus laevis MGC84044 protein, m... 152 3e-36
BC124118_1(BC124118|pid:none) Danio rerio hypothetical protein L... 150 1e-35
BT075280_1(BT075280|pid:none) Osmerus mordax clone omor-eva-514-... 147 2e-34
BC153967_1(BC153967|pid:none) Danio rerio zgc:171566, mRNA (cDNA... 146 2e-34
BT048619_1(BT048619|pid:none) Salmo salar clone ssal-rgb2-633-16... 144 1e-33
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.64 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.11 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for VFC221 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFC221Z
3' end seq.
>VFC221Z.Seq
----------ACAATGGTGACTATTTCCCATTATGGGGAACATGCATGGGATTCCAAGAG
TTGGCATTATTATCAGCAGACAATTTCAATTTACTCTCATCCTACAATTCAGAAAACTAC
ACTGTACCATTAAACTTCACATCATTAGCAGCCGGTAGTAGATTATTCTCATTGGCATCA
TCAAGCATTATGCAATCATTAGCAAGCGAACCAATTACAATGAATAATCATCAATTTGGT
TTATCACCACAAACCTATCAACAAACATCATCAATCAATACTTTCTTTGATGTTTTATCA
ACCAATGTAGATCGTGATGGTAATACCTTTATCTCTACCATCGAGGCAAAGAACTATCCA
ATCTATGGTACTCAATGGCATCCAGAGAAACCAATTTTCGAATGGTGGGATCAAGAAGTA
ATGAATCATTCATTCGACTCAATCATGGCCAATCAATACACTTCAAACTTTTTCGTTAAT
GAATGTAGAAAATCACTTCACTCTTT
Length of 3' end seq. 496
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -