>VFC242 (VFC242Q) /CSM/VF/VFC2-B/VFC242Q.Seq.d/
ACTGTTGGCCTACTGGNATAATAATATTATAAAATTCAAAGGATGTCTAAAGTAGTCCGT
AGTAGTAAATATCGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATCAAAAC
TTAAAAGTTACCAAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGATACTTT
GGTGTTATTTGGGATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGGCTTCA
GGTAAAACCACATCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATATTGCT
TTCCACCCATTCAATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTTGTATT
TGGGGTATCCCAGAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTTTATCT
GGTCACAAGAGXXXXXXXXXX

tvgllx**YYKIQRMSKVVRSSKYRHVFAAQPKKEECYQNLKVTKSAWDSNYVAANTRYF
GVIWDAAGGGSFAVIPHEASGKTTSVPLFNGHKSAVLDIAFHPFNENLVGSVSEDCNICI
WGIPEGGLTDSISTPLQTLSGHK---

Frame A:
tvgllx**YYKIQRMSKVVRSSKYRHVFAAQPKKEECYQNLKVTKSAWDSNYVAANTRYF
GVIWDAAGGGSFAVIPHEASGKTTSVPLFNGHKSAVLDIAFHPFNENLVGSVSEDCNICI
WGIPEGGLTDSISTPLQTLSGHK---


Frame B:
llaywxnniikfkgclk*svvvnivmflqhnqkkksaikt*klpnqhgivitlqptldtl
vlfgmlqvvvhsllfhmrlqvkphqfhysmvirvqf*illsthsmktslvqflkivtfvf
gvsqkvv*ptqsqphsklylvtr---


Frame C:
cwptgiiil*nskdv*ssp***isscfcsttkkrrvlsklksyqismg**lrcsqh*ilw
cylgccrwwfircyst*gfr*nhissiiqws*ecsfrycfppiq*kprwfsf*rl*hlyl
gyprrwfnrlnlnptpnfiwsq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC242 (VFC242Q) /CSM/VF/VFC2-B/VFC242Q.Seq.d/                        807   0.0
VFM753 (VFM753Q) /CSM/VF/VFM7-C/VFM753Q.Seq.d/                        777   0.0
AFJ622 (AFJ622Q) /CSM/AF/AFJ6-A/AFJ622Q.Seq.d/                        773   0.0
CHA189 (CHA189Q) /CSM/CH/CHA1-D/CHA189Q.Seq.d/                        771   0.0
AFI473 (AFI473Q) /CSM/AF/AFI4-D/AFI473Q.Seq.d/                        769   0.0
SFC455 (SFC455Q) /CSM/SF/SFC4-C/SFC455Q.Seq.d/                        765   0.0
VHK803 (VHK803Q) /CSM/VH/VHK8-A/VHK803Q.Seq.d/                        763   0.0
VFO586 (VFO586Q) /CSM/VF/VFO5-D/VFO586Q.Seq.d/                        763   0.0
VFO187 (VFO187Q) /CSM/VF/VFO1-D/VFO187Q.Seq.d/                        763   0.0
VFN315 (VFN315Q) /CSM/VF/VFN3-A/VFN315Q.Seq.d/                        763   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X61480|X61480.1 D.discoideum mRNA for coronin.                   652  0.0  2
BD101198|BD101198.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    44  1.4  1
BD021260|BD021260.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    44  1.4  1
BM986348|BM986348.1 EST531256 Rat gene index, normalized rat, norvegicus Rattus norvegicus cDNA clone RGIAE75 5' end similar to aspartate aminotransferase, mRNA sequence.    42  5.6  1
AC125649|AC125649.4 Rattus norvegicus clone CH230-309G16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  5.6  1
AC131823|AC131823.3 Rattus norvegicus clone CH230-131F9, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    42  5.6  1
AC111251|AC111251.5 Rattus norvegicus clone CH230-13G13, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  8.0  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S18663(S18663) coronin - slime mold (Dictyostelium discoideum)  ...   270   1e-71
AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ...   145   4e-34
FM992694_169(FM992694|pid:none) Candida dubliniensis CD36 chromo...   137   9e-32
AP006852_172(AP006852|pid:none) Candida albicans genomic DNA, ch...   136   2e-31
AE013599_228(AE013599|pid:none) Drosophila melanogaster chromoso...   133   2e-30
BT082970_1(BT082970|pid:none) Anoplopoma fimbria clone afim-evh-...   132   5e-30
BC075371_1(BC075371|pid:none) Xenopus tropicalis coronin, actin ...   131   6e-30
AY190677_1(AY190677|pid:none) Pagrus major actin-binding protein...   130   1e-29
(Q92176) RecName: Full=Coronin-1A; AltName: Full=Coronin-like pr...   129   2e-29
FN392320_628(FN392320|pid:none) Pichia pastoris GS115 chromosome...   129   4e-29

 psg: 0.47  gvh: 0.32  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFC242 is nuc

>VFC242F.Seq
ACTGTTGGCCTACTGGNATAATAATATTATAAAATTCAAAGGATGTCTAAAGTAGTCCGT
AGTAGTAAATATCGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATCAAAAC
TTAAAAGTTACCAAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGATACTTT
GGTGTTATTTGGGATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGGCTTCA
GGTAAAACCACATCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATATTGCT
TTCCACCCATTCAATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTTGTATT
TGGGGTATCCCAGAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTTTATCT
GGTCACAAGAG----------