VFE826
Library VF
(Link to library)
Clone ID VFE826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID VFE826P
(Link to Original site)
Representative DNA sequence
>VFE826 (VFE826Q) /CSM/VF/VFE8-B/VFE826Q.Seq.d/
ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA
AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC
AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC
TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA
TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT
ATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTT
TACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACXXXXXX
XXXXGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGC
TTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTT
CGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGC
AATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAAT
CAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAA
CAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGC
CCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAAT
CTCTATGTGTATTGGTACGGNCTTAGGTGCTGCAGNCTGTTGTTCGTACAGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
iyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvkl
keehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLAGL
PKEVPCYTVNRQCSSGL---

---EGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPA
VAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGAT
GARQMATISRELHRRKGKYGVISMCIGTXLGAAXCCSYR


Translated Amino Acid sequence (All Frames)
Frame A:
ifiynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s
*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnpklelphy*qv
yqrkyhviqstdnvhqvy---

---EGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPA
VAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGAT
GARQMATISRELHRRKGKYGVISMCIGTXLGAAXCCSYR

Frame B:
ylyiilhpitnkmsfnsrietisrhlstgpilesnptsgsvksgddivivapfrtaicka
krgafketapddllapvikhiikvtkldpkligdvvmgavlprssqgatrs*schiisrf
tkgstmlysqqtmfirf---

---rvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvsnhplwvlvqp
lqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqmalvsl*vih*vll
vpvkwlpfqenyivvkvnmv*slcvlvrx*vlqxvvrtd

Frame C:
iyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvkl
keehskrqhqmiy*hqllnilsklpn*iqn*LEMLLWEQYYQDHHKVQPEVRVATLLAGL
PKEVPCYTVNRQCSSGL---

---gwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcrtihygywssr
cnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*skwlwyrfrssircyw
cpsngyhfkritss*r*iwcnlyvywyglrccxllfvq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE826 (VFE826Q) /CSM/VF/VFE8-B/VFE826Q.Seq.d/ 1699 0.0
VFN216 (VFN216Q) /CSM/VF/VFN2-A/VFN216Q.Seq.d/ 914 0.0
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/ 906 0.0
CFF140 (CFF140Q) /CSM/CF/CFF1-B/CFF140Q.Seq.d/ 906 0.0
VSH806 (VSH806Q) /CSM/VS/VSH8-A/VSH806Q.Seq.d/ 904 0.0
SFI740 (SFI740Q) /CSM/SF/SFI7-B/SFI740Q.Seq.d/ 904 0.0
SFD851 (SFD851Q) /CSM/SF/SFD8-C/SFD851Q.Seq.d/ 904 0.0
SFB522 (SFB522Q) /CSM/SF/SFB5-A/SFB522Q.Seq.d/ 904 0.0
CHB576 (CHB576Q) /CSM/CH/CHB5-D/CHB576Q.Seq.d/ 904 0.0
SSJ636 (SSJ636Q) /CSM/SS/SSJ6-B/SSJ636Q.Seq.d/ 900 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 880 0.0 5
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 5e-11 4
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 1e-09 3
AL439008|AL439008.1 T7 end of clone BD0AA001H03 of library BD0AA from strain CBS 94 of Candida tropicalis. 44 3e-09 4
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 6e-09 2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence. 68 6e-09 2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence. 68 7e-09 2
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 3e-08 2
AI563047|AI563047.1 EST00171 watermelon lambda zap library Citrullus lanatus cDNA clone WMLS336 5' similar to acetyl-CoA acyltransferase, mRNA sequence. 56 5e-08 2
BJ573577|BJ573577.1 Ipomoea nil cDNA clone:jm24e12, 3' end, single read. 42 3e-07 3
dna update 2003. 9.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 291 2e-77
FJ502019_1(FJ502019|pid:none) Aristichthys nobilis clone A101 ac... 195 2e-48
BC054299_1(BC054299|pid:none) Xenopus laevis acetyl-Coenzyme A a... 195 2e-48
BC124019_1(BC124019|pid:none) Xenopus tropicalis acetyl-Coenzyme... 193 7e-48
AK220781_1(AK220781|pid:none) Arabidopsis thaliana mRNA for pero... 192 1e-47
AF062589_2(AF062589|pid:none) Arabidopsis thaliana 3-keto-acyl-C... 192 1e-47
AK230209_1(AK230209|pid:none) Arabidopsis thaliana mRNA for pero... 192 1e-47
J02749_1(J02749|pid:none) Rat peroxisomal 3-ketoacyl-CoA thiolas... 192 2e-47
(P21775) RecName: Full=3-ketoacyl-CoA thiolase A, peroxisomal; ... 192 2e-47
M32801_1(M32801|pid:none) Rat 3-ketoacyl-CoA thiolase 2 mRNA, co... 191 2e-47
protein update 2009. 6.19
PSORT

psg: 0.75 gvh: 0.49 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.13 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VFE826 is cyt

5' end seq. ID VFE826F
5' end seq.
>VFE826F.Seq
ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA
AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC
AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC
TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA
TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT
ATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTT
TACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC------
----
Length of 5' end seq. 414
3' end seq. ID VFE826Z
3' end seq.
>VFE826Z.Seq
----------GAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGC
CGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATT
GGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGC
CGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTT
TGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGA
TATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTAC
TGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGG
TGTAATCTCTATGTGTATTGGTACGGNCTTAGGTGCTGCAGNCTGTTGTTCGTACAGAT
Length of 3' end seq. 469
Connected seq. ID VFE826P
Connected seq.
>VFE826P.Seq
ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA
AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC
AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC
TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA
TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT
ATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTT
TACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC------
----GAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGC
TTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTT
CGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGC
AATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAAT
CAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAA
CAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGC
CCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAAT
CTCTATGTGTATTGGTACGGNCTTAGGTGCTGCAGNCTGTTGTTCGTACAGAT
Length of connected seq. 883
Full length Seq ID -
Full length Seq. -
Length of full length seq. -