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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI871
Library VF
(Link to library)
Clone ID VFI871
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08780-1
Original site URL
Representative seq. ID VFI871P
(Link to Original site)
Representative DNA sequence 
>VFI871 (VFI871Q) /CSM/VF/VFI8-C/VFI871Q.Seq.d/
AATTTTATTCATTTTTTTTAAAAAGATAATTATTATTATTTTTCATAAAATAATAGAAAA
ATGATTGAAGAACATAATTGTTTTGAAGAATTTATAAATACAGCAGCAATTGGTGAACAA
CAAGTTTATGGTGAATATAAATCTAAATTAGATTCATTTACAGATGAAAGTAAATTACCA
TATGAATTATTATTAGAGAGAAAGAATTTAGTAGAATTGAAAATTTCTGATGAAGAATAT
AAAAAGAGTGAATCTGCATTAAAAACACCAAATCCAACATTATTACAAAAGTTTCAAATT
AATTTTTATCAAACTATTGAATCGATTAATCAAGTATTTAAACCATCATCATCATCATCA
AATCAATCATCATCATCGTCCTCCTCGAATGAAGATGATTCATTACAAAATAAAAAGATT
AAAGTAATGTCATGGCATCCACAACATAGATTACTTGCAGTTTGTAATAAAAATGATGTT
ATTTATATCTACTATTTXXXXXXXXXXCAAATACAATTACATGGTCATCAAATGGTTTAC
AATTAGCATGTGGTTCAACTAATCATAGTTCAATTCTATTATGGGATGTTGTATCTAGAG
TACCAACATTCATACCACGTTATAATGGTAACTCATTATTAGTTTGGTCTCCAAAAAATG
ATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGAATTTTCGATATCTCAAAATGGGATT
ACAATAATAAAGAATGGCCAATGTTAACAAATTATCAAACAGGATCATGGAATGGAAAAG
GTGAATATTTAGCAGTTGCAAGTGGTGATAGAATTCAGTTTATTCAATGTATAAATAGAG
CATTTGAATCAGGTGGTGAATTAATGTATGTTGAGAAAACTTCAACCTATAGATTACAAA
ATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGTGAATTATTTTTAGGCGGACATATAA
AGAAAATTGCATGGTCACCTGATAGTCAAAGATTGGCTGTCATCTTTTATTTAAATAGCA
AGAGTAGAAATAATGATACTTATTGTGCAATCTATAAAATTAAAACTTATCCTAAATTTT
CTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTTG
TCCCAAATTATAAAAAAGGTTCTTTATTATCAATTGCCTACAATGATGGAACAATTAAAT
TTTTCCCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACACT
sequence update 2001.11.22
Translated Amino Acid sequence 
nfihff*kdnyyyfs*NNRKMIEEHNCFEEFINTAAIGEQQVYGEYKSKLDSFTDESKLP
YELLLERKNLVELKISDEEYKKSESALKTPNPTLLQKFQINFYQTIESINQVFKPSSSSS
NQSSSSSSSNEDDSLQNKKIKVMSWHPQHRLLAVCNKNDVIYIYY---

---NTITWSSNGLQLACGSTNHSSILLWDVVSRVPTFIPRYNGNSLLVWSPKNDYLLSCG
GKTCRIFDISKWDYNNKEWPMLTNYQTGSWNGKGEYLAVASGDRIQFIQCINRAFESGGE
LMYVEKTSTYRLQNVGGSGGGSSSSELFLGGHIKKIAWSPDSQRLAVIFYLNSKSRNNDT
YCAIYKIKTYPKFSVTPRGFIRSKDQSIQSVSFVPNYKKGSLLSIAYNDGTIKFFPLLYQ
YKQ*enkdft
Translated Amino Acid sequence (All Frames) 
Frame A:
nfihff*kdnyyyfs*NNRKMIEEHNCFEEFINTAAIGEQQVYGEYKSKLDSFTDESKLP
YELLLERKNLVELKISDEEYKKSESALKTPNPTLLQKFQINFYQTIESINQVFKPSSSSS
NQSSSSSSSNEDDSLQNKKIKVMSWHPQHRLLAVCNKNDVIYIYY---

---qiqlhghqmvyn*hvvqliivqfyygmlyleyqhsyhvimvthy*fglqkmiifylv
vvklvefsisqngitiikngqc*qiikqdhgmekvni*qlqvviefslfnv*iehlnqvv
n*cmlrklqpidykmlvvvvvvqvvvnyf*adi*rklhghlivkdwlssfi*iarveimi
livqsiklklilnfl*hqevs*gqkinqfnqfllsqiikkvlyyqlptmmeqlnfshyyi
ninnkkikilh

Frame B:
ilfiffkkiiiiifhkiiek*lkniivlknl*iqqqlvnnkfmvninln*ihlqmkvnyh
mnyy*reri**n*kflmknikrvnlh*khqiqhyyksfklifikllnrlikylnhhhhhq
inhhhrpprmkmihykikrlk*chgihnidylqfvikmmlfisti---

---kynymvikwftismwfn*s*fnsimgcci*stnihttl*w*liislvskk*lsfilw
w*nl*nfrylkmglq**rmanvnklsnrimewkr*ifssckw**nsvysmyk*si*irw*
invc*enfnl*itkcww*wwwfk***iifrrtykencmvt**skigchllfk*qe*k**y
llcnl*n*nls*ifcntkrfhkvkrsinsisffcpkl*krffiinclq*wnn*ifpiiis
i*tirk*rfyt

Frame C:
fysfflkr*lllffik**knd*rt*lf*riykyssnw*ttslw*i*i*irfiyr*k*iti
*iiirekefsrienf**ri*ke*icikntksniitkvsn*flsny*id*ssi*tiiiiik
siiiivlle*r*fitk*kd*snvmastt*itcsl**k*cylyllf---

---NTITWSSNGLQLACGSTNHSSILLWDVVSRVPTFIPRYNGNSLLVWSPKNDYLLSCG
GKTCRIFDISKWDYNNKEWPMLTNYQTGSWNGKGEYLAVASGDRIQFIQCINRAFESGGE
LMYVEKTSTYRLQNVGGSGGGSSSSELFLGGHIKKIAWSPDSQRLAVIFYLNSKSRNNDT
YCAIYKIKTYPKFSVTPRGFIRSKDQSIQSVSFVPNYKKGSLLSIAYNDGTIKFFPLLYQ
YKQ*enkdft
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI871 (VFI871Q) /CSM/VF/VFI8-C/VFI871Q.Seq.d/                       1675   0.0
AFI409 (AFI409Q) /CSM/AF/AFI4-A/AFI409Q.Seq.d/                       1477   0.0
AFH742 (AFH742Q) /CSM/AF/AFH7-B/AFH742Q.Seq.d/                       1473   0.0
SSK827 (SSK827Q) /CSM/SS/SSK8-B/SSK827Q.Seq.d/                       1294   0.0
CFG838 (CFG838Q) /CSM/CF/CFG8-B/CFG838Q.Seq.d/                       1221   0.0
CFG822 (CFG822Q) /CSM/CF/CFG8-A/CFG822Q.Seq.d/                        553   e-156
SSE416 (SSE416Q) /CSM/SS/SSE4-A/SSE416Q.Seq.d/                        147   5e-34
VSB478 (VSB478Q) /CSM/VS/VSB4-D/VSB478Q.Seq.d/                        105   2e-21
VSC172 (VSC172Q) /CSM/VS/VSC1-C/VSC172Q.Seq.d/                         46   0.001
VHH302 (VHH302Q) /CSM/VH/VHH3-A/VHH302Q.Seq.d/                         46   0.001
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ432442) Dictyostelium discoideum cDNA clone:ddv18n18, 3' ...  1477   0.0    1
(BJ343731) Dictyostelium discoideum cDNA clone:dda17b04, 3' ...  1477   0.0    1
(BJ343502) Dictyostelium discoideum cDNA clone:dda16d11, 3' ...  1473   0.0    1
(C94314) Dictyostelium discoideum slug cDNA, clone SSK827.       1294   0.0    1
(BJ372837) Dictyostelium discoideum cDNA clone:ddc14l10, 3' ...  1178   0.0    2
(AC115581) Dictyostelium discoideum chromosome 2 map complem...   829   0.0    5
(BJ359415) Dictyostelium discoideum cDNA clone:ddc14l10, 5' ...   642   0.0    2
(BJ414303) Dictyostelium discoideum cDNA clone:ddv18n18, 5' ...   642   0.0    2
(BJ326381) Dictyostelium discoideum cDNA clone:dda16d11, 5' ...   478   0.0    3
(BJ326572) Dictyostelium discoideum cDNA clone:dda17b04, 5' ...   622   0.0    2
dna update 2009. 1.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115581_9(AC115581|pid:none) Dictyostelium discoideum chromosom...   477   e-133
BC077988_1(BC077988|pid:none) Xenopus laevis achalasia, adrenoco...    92   5e-17
AK088247_1(AK088247|pid:none) Mus musculus 2 days neonate thymus...    84   1e-14
BC067671_1(BC067671|pid:none) Danio rerio achalasia, adrenocorti...    82   4e-14
BC120418_1(BC120418|pid:none) Bos taurus achalasia, adrenocortic...    80   2e-13
AY891872_1(AY891872|pid:none) Synthetic construct Homo sapiens c...    79   3e-13
AK222509_1(AK222509|pid:none) Homo sapiens mRNA for achalasia, a...    79   3e-13
(Q9NRG9) RecName: Full=Aladin; AltName: Full=Adracalin;  &AF2260...    79   3e-13
AK000833_1(AK000833|pid:none) Homo sapiens cDNA FLJ20826 fis, cl...    79   3e-13
EF147038_1(EF147038|pid:none) Populus trichocarpa clone WS01226_...    76   3e-12
protein update 2009. 6.21
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VFI871 is nuc
5' end seq. ID VFI871F
5' end seq. 
>VFI871F.Seq
AATTTTATTCATTTTTTTTAAAAAGATAATTATTATTATTTTTCATAAAATAATAGAAAA
ATGATTGAAGAACATAATTGTTTTGAAGAATTTATAAATACAGCAGCAATTGGTGAACAA
CAAGTTTATGGTGAATATAAATCTAAATTAGATTCATTTACAGATGAAAGTAAATTACCA
TATGAATTATTATTAGAGAGAAAGAATTTAGTAGAATTGAAAATTTCTGATGAAGAATAT
AAAAAGAGTGAATCTGCATTAAAAACACCAAATCCAACATTATTACAAAAGTTTCAAATT
AATTTTTATCAAACTATTGAATCGATTAATCAAGTATTTAAACCATCATCATCATCATCA
AATCAATCATCATCATCGTCCTCCTCGAATGAAGATGATTCATTACAAAATAAAAAGATT
AAAGTAATGTCATGGCATCCACAACATAGATTACTTGCAGTTTGTAATAAAAATGATGTT
ATTTATATCTACTATTTNNNNNNNNNN
Length of 5' end seq. 507
3' end seq. ID VFI871Z
3' end seq. 
>VFI871Z.Seq
NNNNNNNNNNCAAATACAATTACATGGTCATCAAATGGTTTACAATTAGCATGTGGTTCA
ACTAATCATAGTTCAATTCTATTATGGGATGTTGTATCTAGAGTACCAACATTCATACCA
CGTTATAATGGTAACTCATTATTAGTTTGGTCTCCAAAAAATGATTATCTTTTATCTTGT
GGTGGTAAAACTTGTAGAATTTTCGATATCTCAAAATGGGATTACAATAATAAAGAATGG
CCAATGTTAACAAATTATCAAACAGGATCATGGAATGGAAAAGGTGAATATTTAGCAGTT
GCAAGTGGTGATAGAATTCAGTTTATTCAATGTATAAATAGAGCATTTGAATCAGGTGGT
GAATTAATGTATGTTGAGAAAACTTCAACCTATAGATTACAAAATGTTGGTGGTAGTGGT
GGTGGTTCAAGTAGTAGTGAATTATTTTTAGGCGGACATATAAAGAAAATTGCATGGTCA
CCTGATAGTCAAAGATTGGCTGTCATCTTTTATTTAAATAGCAAGAGTAGAAATAATGAT
ACTTATTGTGCAATCTATAAAATTAAAACTTATCCTAAATTTTCTGTAACACCAAGAGGT
TTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTTGTCCCAAATTATAAAAAA
GGTTCTTTATTATCAATTGCCTACAATGATGGAACAATTAAATTTTTCCCATTATTATAT
CAATATAAACAATAAGAAAATAAAGATTTTACACT
Length of 3' end seq. 755
Connected seq. ID VFI871P
Connected seq. 
>VFI871P.Seq
AATTTTATTCATTTTTTTTAAAAAGATAATTATTATTATTTTTCATAAAATAATAGAAAA
ATGATTGAAGAACATAATTGTTTTGAAGAATTTATAAATACAGCAGCAATTGGTGAACAA
CAAGTTTATGGTGAATATAAATCTAAATTAGATTCATTTACAGATGAAAGTAAATTACCA
TATGAATTATTATTAGAGAGAAAGAATTTAGTAGAATTGAAAATTTCTGATGAAGAATAT
AAAAAGAGTGAATCTGCATTAAAAACACCAAATCCAACATTATTACAAAAGTTTCAAATT
AATTTTTATCAAACTATTGAATCGATTAATCAAGTATTTAAACCATCATCATCATCATCA
AATCAATCATCATCATCGTCCTCCTCGAATGAAGATGATTCATTACAAAATAAAAAGATT
AAAGTAATGTCATGGCATCCACAACATAGATTACTTGCAGTTTGTAATAAAAATGATGTT
ATTTATATCTACTATTT----------CAAATACAATTACATGGTCATCAAATGGTTTAC
AATTAGCATGTGGTTCAACTAATCATAGTTCAATTCTATTATGGGATGTTGTATCTAGAG
TACCAACATTCATACCACGTTATAATGGTAACTCATTATTAGTTTGGTCTCCAAAAAATG
ATTATCTTTTATCTTGTGGTGGTAAAACTTGTAGAATTTTCGATATCTCAAAATGGGATT
ACAATAATAAAGAATGGCCAATGTTAACAAATTATCAAACAGGATCATGGAATGGAAAAG
GTGAATATTTAGCAGTTGCAAGTGGTGATAGAATTCAGTTTATTCAATGTATAAATAGAG
CATTTGAATCAGGTGGTGAATTAATGTATGTTGAGAAAACTTCAACCTATAGATTACAAA
ATGTTGGTGGTAGTGGTGGTGGTTCAAGTAGTAGTGAATTATTTTTAGGCGGACATATAA
AGAAAATTGCATGGTCACCTGATAGTCAAAGATTGGCTGTCATCTTTTATTTAAATAGCA
AGAGTAGAAATAATGATACTTATTGTGCAATCTATAAAATTAAAACTTATCCTAAATTTT
CTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTTG
TCCCAAATTATAAAAAAGGTTCTTTATTATCAATTGCCTACAATGATGGAACAATTAAAT
TTTTCCCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACACT
Length of connected seq. 1242
Full length Seq ID -
Full length Seq. -
Length of full length seq. -