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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB375
Library VH
(Link to library)
Clone ID VHB375
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11004-1
Original site URL
Representative seq. ID VHB375P
(Link to Original site)
Representative DNA sequence 
>VHB375 (VHB375Q) /CSM/VH/VHB3-D/VHB375Q.Seq.d/
CNCCAATANAATCAGAAAATAGTGCAACTGGTCATACATCACCACCCAATAATTCAGCAA
CANCAACAACTTCATCAACATCAGCACAACCAATAACAGTNTTACCCACAGAGATTATTA
AAACNTTTGAACATTTATTAAGAAAATCACAAAGATTNTTTATAGGATTAANAGATCTTC
CNCAATTTGGTANACAATGGCAACCNTTCTTTCAAAAAACATTTGAACTCTATACAAAAT
TATGGAAATTTCANCANCAATATCGTGCAATTCTTGAANATAAATCAAANTATGGTCTAA
AAAGATGTGAAATTGGTGAAATCGCTTCAAAAATTGGACAATTATNTTATCATTATTNTT
TANNAACTAGTGACACAAATTATTTAAATGAATCATATATATTTTATGAXXXXXXXXXXC
AACATCAAATATTCCAATTTATNAATATAATGAAGCACCTTTCAATNCAAAGGTTGAATC
ATTATATCCAATGGATTTATTACCATTTTGTAGAAAACCATTCTTTTTAATTGTGAACTG
TCAATCAAGTGATATTTTCAATGAACTTCCAACATTTAATCAACCATTCGTTTCACTATT
ATCCCCACAATCAATACCAAAGAAATTGGTATCAAATTTAAAATGTGGTAATTNATTTAC
ATTCTTTTTACACGATCCAATTAGTGCTTTTTGTGATATCTCTTGTGGCAATAAGATACC
ATCAAAAACATTTAATAACATTAGTTTATTGGCTCAAAACAGTTTAGAGATCATCTCAAA
ATTATTGTTTGAATGTGTTGATTTACATCCATCCTTTTCTTTCTTTTTATTGGATGATTT
CTTAAGATCTTTCATTATTAGATTTATNTTTTGTCATGCTACTTTTTATTTACATAAAGA
GTTTCAAGATAATATTTATCAAGTTAAATCAAATCCACCATTACCAAAGTCATTACTTTA
TAATCAATCAATTTTANAATCAATTCATCAATTGGTGAGTGAGTTGGATGTTAGTGACCA
ATTTTTGGGTTTAAACGAAAATCGTTTAGTAATTCAGAAAATTAATAAAGCATAAAAAAA
ATATATAAATAATAAAATAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
PIXSENSATGHTSPPNNSATXTTSSTSAQPITVLPTEIIKTFEHLLRKSQRXFIGLXDLP
QFGXQWQPFFQKTFELYTKLWKFXXQYRAILEXKSXYGLKRCEIGEIASKIGQLXYHYXL
XTSDTNYLNESYIFY---

---TSNIPIYXYNEAPFNXKVESLYPMDLLPFCRKPFFLIVNCQSSDIFNELPTFNQPFV
SLLSPQSIPKKLVSNLKCGNXFTFFLHDPISAFCDISCGNKIPSKTFNNISLLAQNSLEI
ISKLLFECVDLHPSFSFFLLDDFLRSFIIRFXFCHATFYLHKEFQDNIYQVKSNPPLPKS
LLYNQSILXSIHQLVSELDVSDQFLGLNENRLVIQKINKA*kkyinnki
Translated Amino Acid sequence (All Frames) 
Frame A:
xqxnqkivqlvihhhpiiqqxqqlhqhqhnq*qxypqrllkxlniy*enhkdxl*d*xif
xnlvxngnxsfkkhlnsiqnygnfxxnivqflxinqxmv*kdvklvkslqkldnyxiiix
xxlvtqii*mnhiyfm---

---qhqifqfxnimkhlsxqrlnhyiqwiyyhfvenhsf*l*tvnqvifsmnfqhlinhs
fhyyphnqyqrnwyqi*nvvixlhsfytiqlvlfvislvairyhqkhlitlvywlktv*r
ssqnyclnvliyihpflsfywmis*dlslldlxfvmllfiyiksfkiifiklnqihhyqs
hyfiinqfxnqfinw*vswmlvtnfwv*tkiv**frklikhkkni*iik*

Frame B:
xnxirk*cnwsyittq*fsnxnnfinisttnnsxthrdy*nx*tfikkitkixyrixrss
xiwxtmatxlskni*tlykimeisxxiscns*x*ikxwskkm*nw*nrfknwtixlslxf
xn**hklfk*iiyil*---

---nikysnlxi**stfqxkg*iiisngfitil*ktilfncelsik*yfq*tsni*stir
ftiiptintkeigikfkmw*xiyilftrsn*cfl*yllwq*dtikni**h*figskqfrd
hlkiiv*mc*ftsilfflfig*flkifhy*iyxlscyflft*rvsr*ylss*ikstitkv
itl*sinfxinssige*vgc**pifgfkrksfsnsen**sikkiyk**nn

Frame C:
PIXSENSATGHTSPPNNSATXTTSSTSAQPITVLPTEIIKTFEHLLRKSQRXFIGLXDLP
QFGXQWQPFFQKTFELYTKLWKFXXQYRAILEXKSXYGLKRCEIGEIASKIGQLXYHYXL
XTSDTNYLNESYIFY---

---TSNIPIYXYNEAPFNXKVESLYPMDLLPFCRKPFFLIVNCQSSDIFNELPTFNQPFV
SLLSPQSIPKKLVSNLKCGNXFTFFLHDPISAFCDISCGNKIPSKTFNNISLLAQNSLEI
ISKLLFECVDLHPSFSFFLLDDFLRSFIIRFXFCHATFYLHKEFQDNIYQVKSNPPLPKS
LLYNQSILXSIHQLVSELDVSDQFLGLNENRLVIQKINKA*kkyinnki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB375 (VHB375Q) /CSM/VH/VHB3-D/VHB375Q.Seq.d/                       1901   0.0
CHO644 (CHO644Q) /CSM/CH/CHO6-B/CHO644Q.Seq.d/                       1225   0.0
AHH882 (AHH882Q) /CSM/AH/AHH8-D/AHH882Q.Seq.d/                       1225   0.0
AHC158 (AHC158Q) /CSM/AH/AHC1-C/AHC158Q.Seq.d/                       1225   0.0
AHB415 (AHB415Q) /CSM/AH/AHB4-A/AHB415Q.Seq.d/                       1225   0.0
CHF278 (CHF278Q) /CSM/CH/CHF2-D/CHF278Q.Seq.d/                       1219   0.0
AHK435 (AHK435Q) /CSM/AH/AHK4-B/AHK435Q.Seq.d/                       1217   0.0
CHO765 (CHO765Q) /CSM/CH/CHO7-C/CHO765Q.Seq.d/                       1215   0.0
CHM357 (CHM357Q) /CSM/CH/CHM3-C/CHM357Q.Seq.d/                       1213   0.0
CHH161 (CHH161Q) /CSM/CH/CHH1-C/CHH161Q.Seq.d/                       1207   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC141324|AC141324.1 Pan troglodytes BAC clone RP43-1G23 from 7, complete sequence.    44   0.012  3
AC146217|AC146217.2 Pan troglodytes BAC clone RP43-33E1 from chromosome 7, complete sequence.    44   0.014  3
AC146218|AC146218.2 Pan troglodytes BAC clone CH251-267E2 from Y, complete sequence.    44   0.13   2
AC097674|AC097674.6 Rattus norvegicus 2 CH230-75D18 (Children's Hospital Oakland Research Institute) complete sequence.    44   0.20   1
AC151109|AC151109.1 Pan troglodytes FOSMID clone CH1251-3184H6 from chromosome y, complete sequence.    44   0.20   1
AC098890|AC098890.3 Mus musculus clone RP23-122P22, complete sequence.    34   0.40   6
AA550664|AA550664.1 1901m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1901m, genomic survey sequence.    42   0.77   1
AA550658|AA550658.1 1895m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1895m, DNA sequence.    42   0.77   1
AC073906|AC073906.6 Trypanosoma brucei chromosome 6 clone RPCI93-3A7, complete sequence.    42   0.77   1
AC008362|AC008362.5 Drosophila melanogaster, chromosome 3R, region 90D-90E, BAC clone BACR01C15, complete sequence.    42   0.77   1
dna update 2007. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YY1) RecName: Full=UPF0682 protein;                               384   e-105
AE014296_1124(AE014296|pid:none) Drosophila melanogaster chromos...   104   5e-21
FN357301_45(FN357301|pid:none) Schistosoma mansoni genome sequen...   103   8e-21
FN318892_1(FN318892|pid:none) Schistosoma japonicum isolate Anhu...   101   4e-20
FN318891_1(FN318891|pid:none) Schistosoma japonicum isolate Anhu...   100   9e-20
AK098024_1(AK098024|pid:none) Homo sapiens cDNA FLJ40705 fis, cl...   100   1e-19
BC104030_1(BC104030|pid:none) Homo sapiens chromosome 9 open rea...   100   1e-19
(Q8N9R8) RecName: Full=UPF0682 protein C9orf126;  &AK093983_1(AK...   100   1e-19
(Q8C8N2) RecName: Full=UPF0682 protein C9orf126 homolog;  &AL844...   100   1e-19
AK163712_1(AK163712|pid:none) Mus musculus 10 days neonate cereb...   100   1e-19
protein update 2009. 6.27
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VHB375 is cyt
5' end seq. ID VHB375F
5' end seq. 
>VHB375F.Seq
CNCCAATANAATCAGAAAATAGTGCAACTGGTCATACATCACCACCCAATAATTCAGCAA
CANCAACAACTTCATCAACATCAGCACAACCAATAACAGTNTTACCCACAGAGATTATTA
AAACNTTTGAACATTTATTAAGAAAATCACAAAGATTNTTTATAGGATTAANAGATCTTC
CNCAATTTGGTANACAATGGCAACCNTTCTTTCAAAAAACATTTGAACTCTATACAAAAT
TATGGAAATTTCANCANCAATATCGTGCAATTCTTGAANATAAATCAAANTATGGTCTAA
AAAGATGTGAAATTGGTGAAATCGCTTCAAAAATTGGACAATTATNTTATCATTATTNTT
TANNAACTAGTGACACAAATTATTTAAATGAATCATATATATTTTATGANNNNNNNNNN
Length of 5' end seq. 419
3' end seq. ID VHB375Z
3' end seq. 
>VHB375Z.Seq
NNNNNNNNNNCAACATCAAATATTCCAATTTATNAATATAATGAAGCACCTTTCAATNCA
AAGGTTGAATCATTATATCCAATGGATTTATTACCATTTTGTAGAAAACCATTCTTTTTA
ATTGTGAACTGTCAATCAAGTGATATTTTCAATGAACTTCCAACATTTAATCAACCATTC
GTTTCACTATTATCCCCACAATCAATACCAAAGAAATTGGTATCAAATTTAAAATGTGGT
AATTNATTTACATTCTTTTTACACGATCCAATTAGTGCTTTTTGTGATATCTCTTGTGGC
AATAAGATACCATCAAAAACATTTAATAACATTAGTTTATTGGCTCAAAACAGTTTAGAG
ATCATCTCAAAATTATTGTTTGAATGTGTTGATTTACATCCATCCTTTTCTTTCTTTTTA
TTGGATGATTTCTTAAGATCTTTCATTATTAGATTTATNTTTTGTCATGCTACTTTTTAT
TTACATAAAGAGTTTCAAGATAATATTTATCAAGTTAAATCAAATCCACCATTACCAAAG
TCATTACTTTATAATCAATCAATTTTANAATCAATTCATCAATTGGTGAGTGAGTTGGAT
GTTAGTGACCAATTTTTGGGTTTAAACGAAAATCGTTTAGTAATTCAGAAAATTAATAAA
GCATAAAAAAAATATATAAATAATAAAATAAT
Length of 3' end seq. 692
Connected seq. ID VHB375P
Connected seq. 
>VHB375P.Seq
CNCCAATANAATCAGAAAATAGTGCAACTGGTCATACATCACCACCCAATAATTCAGCAA
CANCAACAACTTCATCAACATCAGCACAACCAATAACAGTNTTACCCACAGAGATTATTA
AAACNTTTGAACATTTATTAAGAAAATCACAAAGATTNTTTATAGGATTAANAGATCTTC
CNCAATTTGGTANACAATGGCAACCNTTCTTTCAAAAAACATTTGAACTCTATACAAAAT
TATGGAAATTTCANCANCAATATCGTGCAATTCTTGAANATAAATCAAANTATGGTCTAA
AAAGATGTGAAATTGGTGAAATCGCTTCAAAAATTGGACAATTATNTTATCATTATTNTT
TANNAACTAGTGACACAAATTATTTAAATGAATCATATATATTTTATGA----------C
AACATCAAATATTCCAATTTATNAATATAATGAAGCACCTTTCAATNCAAAGGTTGAATC
ATTATATCCAATGGATTTATTACCATTTTGTAGAAAACCATTCTTTTTAATTGTGAACTG
TCAATCAAGTGATATTTTCAATGAACTTCCAACATTTAATCAACCATTCGTTTCACTATT
ATCCCCACAATCAATACCAAAGAAATTGGTATCAAATTTAAAATGTGGTAATTNATTTAC
ATTCTTTTTACACGATCCAATTAGTGCTTTTTGTGATATCTCTTGTGGCAATAAGATACC
ATCAAAAACATTTAATAACATTAGTTTATTGGCTCAAAACAGTTTAGAGATCATCTCAAA
ATTATTGTTTGAATGTGTTGATTTACATCCATCCTTTTCTTTCTTTTTATTGGATGATTT
CTTAAGATCTTTCATTATTAGATTTATNTTTTGTCATGCTACTTTTTATTTACATAAAGA
GTTTCAAGATAATATTTATCAAGTTAAATCAAATCCACCATTACCAAAGTCATTACTTTA
TAATCAATCAATTTTANAATCAATTCATCAATTGGTGAGTGAGTTGGATGTTAGTGACCA
ATTTTTGGGTTTAAACGAAAATCGTTTAGTAATTCAGAAAATTAATAAAGCATAAAAAAA
ATATATAAATAATAAAATAAT
Length of connected seq. 1091
Full length Seq ID -
Full length Seq. -
Length of full length seq. -