NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB386
Library VH
(Link to library)
Clone ID VHB386
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID VHB386P
(Link to Original site)
Representative DNA sequence 
>VHB386 (VHB386Q) /CSM/VH/VHB3-D/VHB386Q.Seq.d/
ATTATTTGAAAATCCAGAAGTTTTGGAGTCAAGAAGAACTAAACAAAGAGCTTCCAATTA
TAGAAAAACTCTTGAAAGAGAAAAAGAAGGTATCAAACCATTAGATAATATTTTAGAAGA
ATTAAAAGCAAATGCAAATGGTTTAACAAAAGCTGAAGCTCAAAAAAGATTAGAAGAAGT
TGGACCAAATGCAATTCCAGATGTTAAAAGATATCCAATTTTAGAATTTTTATATTTTAT
GTGGAATCCATTATCATGGACTATGGAAGTTGCAGCTATTGTATCAATTGCATTATTAGA
TTGGGTTGATTTTATATTGATTTGTGCATTATTACTTTTGAATGCAACCATTGGTTTCAT
TGAAGAGAATACAGCAGGTAATGCAGTAGAGGCTTTAAAGAATTCATTGGTTAGTCAAAT
CCGTTGTATGAGAGATGGTGAATGGGTTATGTTACCATCACCAGATCTTGTACCAGGTGA
TGTTGTAATGTTAAAGATTGGTGCCATTATTCCAGCCGATTGTAGAGTTATCGAAGCTGA
ACAAGTTAAAATCGATCAATCTTCATTGACAGGTGAATCTTTACCAGTCACTAAAAAGAT
TGGTGATGAAGTTTACTCTGGTTCAGCAATGAAACAAGGTGAAGCAAAXXXXXXXXXXTA
AAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTA
TGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTC
ATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTC
GTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTA
GTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGT
CTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCT
TTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTT
GGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAAT
TAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTA
AAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAG
TTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAAACCCATC
sequence update 2002.10.25
Translated Amino Acid sequence 
LFENPEVLESRRTKQRASNYRKTLEREKEGIKPLDNILEELKANANGLTKAEAQKRLEEV
GPNAIPDVKRYPILEFLYFMWNPLSWTMEVAAIVSIALLDWVDFILICALLLLNATIGFI
EENTAGNAVEALKNSLVSQIRCMRDGEWVMLPSPDLVPGDVVMLKIGAIIPADCRVIEAE
QVKIDQSSLTGESLPVTKKIGDEVYSGSAMKQGEA---

---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKD
ALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQENP
Translated Amino Acid sequence (All Frames) 
Frame A:
ii*ksrsfgvkkn*tksfql*kns*krkrryqtir*yfrrikskckwfnks*sskkirrs
wtkcnsrc*kisnfrififyvesiimdygscsycinciirlg*fyidlciitfecnhwfh
*reysr*csrgfkefig*snplyerw*mgyvtitrsctr*ccnvkdwchyssrl*syrs*
ts*nrsifidr*iftsh*kdw**sllwfsnetr*sk---

---*rscks*k*trsmesfrsihygtllwflfsrfnhcilcnhs*wylvp*cyqssylnr
**tswshlssslylwscnyfrit*srflll*tsr*scnlcfryvsnccylywclwfpwls
t*flfr*srlsstwykfprlwlglgclcldlvfplvhsngfh*irchlyspw*d*tnq*r
ctp*nlwlvw*rnpkgsnssls*sc*tts*krcftctrkpi

Frame B:
LFENPEVLESRRTKQRASNYRKTLEREKEGIKPLDNILEELKANANGLTKAEAQKRLEEV
GPNAIPDVKRYPILEFLYFMWNPLSWTMEVAAIVSIALLDWVDFILICALLLLNATIGFI
EENTAGNAVEALKNSLVSQIRCMRDGEWVMLPSPDLVPGDVVMLKIGAIIPADCRVIEAE
QVKIDQSSLTGESLPVTKKIGDEVYSGSAMKQGEA---

---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKD
ALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQENP

Frame C:
ylkiqkfwsqeelnkelpiiekllkekkkvsnh*iif*kn*kqmqmv*qklklkkd*kkl
dqmqfqmlkdiqf*nfyilcgihyhglwklqllyqlhy*iglily*fvhyyf*mqplvsl
kriqqvmq*rl*rihwlvksvv*emvnglcyhhqilyqvml*c*rlvplfqpivelskln
klksinlh*qvnlyqslkrlvmkftlvqq*nkvkq---

---kiv*elemnqingifskyslwhfvmvsi**vqplyslqsfmmvlgsmmlsifvs*pi
mnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sllslclklllpllvsmvsvvih
mipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfqwisln*vspifsvvrlnqsikm
hsvksmvglvkksqrkqlkslikllnnklkemlymhkkth
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB386 (VHB386Q) /CSM/VH/VHB3-D/VHB386Q.Seq.d/                       2541   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1283   0.0
VHP530 (VHP530Q) /CSM/VH/VHP5-B/VHP530Q.Seq.d/                       1283   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1283   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1283   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1283   0.0
VHI348 (VHI348Q) /CSM/VH/VHI3-B/VHI348Q.Seq.d/                       1283   0.0
VHH560 (VHH560Q) /CSM/VH/VHH5-C/VHH560Q.Seq.d/                       1283   0.0
VHD413 (VHD413Q) /CSM/VH/VHD4-A/VHD413Q.Seq.d/                       1283   0.0
VHC544 (VHC544Q) /CSM/VH/VHC5-B/VHC544Q.Seq.d/                       1283   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1285   0.0    1
EL476977|EL476977.1 CHUL5210.b1_C08.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL5210, mRNA sequence.    56   2e-09  3
CR298626|CR298626.1 mte1-16C14FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    58   5e-08  2
CA921796|CA921796.1 EST639514 MTUS Medicago truncatula cDNA clone MTUS-44E4, mRNA sequence.    58   7e-08  2
CR332037|CR332037.1 mte1-61K12FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    58   8e-08  2
BE318340|BE318340.2 NF037A09LF1F1066 Developing leaf Medicago truncatula cDNA clone NF037A09LF 5', mRNA sequence.    58   2e-07  2
AC140026|AC140026.11 Medicago truncatula clone mth2-36j24, complete sequence.    58   2e-04  5
DR920154|DR920154.1 EST1111693 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1MC32, mRNA sequence.    52   2e-04  3
DR953550|DR953550.1 EST1145089 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1S809, mRNA sequence.    52   2e-04  3
DW112389|DW112389.1 CLRX9312.b1_O23.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX9312, mRNA sequence.    48   2e-04  3
dna update 2007. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   456   e-127
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   456   e-127
AY344962_1(AY344962|pid:none) Phytophthora infestans plasma memb...   206   1e-51
DQ533871_1(DQ533871|pid:none) Phytophthora nicotianae plasma mem...   206   1e-51
AL603947_1(AL603947|pid:none) Ustilago maydis gene for predicted...   206   1e-51
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   200   1e-49
(Q7XPY2) RecName: Full=Plasma membrane ATPase;          EC=3.6.3...   199   1e-49
FB811294_1(FB811294|pid:none) Sequence 30567 from Patent WO20080...   199   2e-49
FB811240_1(FB811240|pid:none) Sequence 30513 from Patent WO20080...   198   3e-49
EF576615_1(EF576615|pid:none) Oryza sativa (indica cultivar-grou...   198   3e-49
protein update 2009. 6.27
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.20  top: 0.53  tms: 0.47  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 68.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VHB386 is pla
5' end seq. ID VHB386F
5' end seq. 
>VHB386F.Seq
ATTATTTGAAAATCCAGAAGTTTTGGAGTCAAGAAGAACTAAACAAAGAGCTTCCAATTA
TAGAAAAACTCTTGAAAGAGAAAAAGAAGGTATCAAACCATTAGATAATATTTTAGAAGA
ATTAAAAGCAAATGCAAATGGTTTAACAAAAGCTGAAGCTCAAAAAAGATTAGAAGAAGT
TGGACCAAATGCAATTCCAGATGTTAAAAGATATCCAATTTTAGAATTTTTATATTTTAT
GTGGAATCCATTATCATGGACTATGGAAGTTGCAGCTATTGTATCAATTGCATTATTAGA
TTGGGTTGATTTTATATTGATTTGTGCATTATTACTTTTGAATGCAACCATTGGTTTCAT
TGAAGAGAATACAGCAGGTAATGCAGTAGAGGCTTTAAAGAATTCATTGGTTAGTCAAAT
CCGTTGTATGAGAGATGGTGAATGGGTTATGTTACCATCACCAGATCTTGTACCAGGTGA
TGTTGTAATGTTAAAGATTGGTGCCATTATTCCAGCCGATTGTAGAGTTATCGAAGCTGA
ACAAGTTAAAATCGATCAATCTTCATTGACAGGTGAATCTTTACCAGTCACTAAAAAGAT
TGGTGATGAAGTTTACTCTGGTTCAGCAATGAAACAAGGTGAAGCAAANNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID VHB386Z
3' end seq. 
>VHB386Z.Seq
NNNNNNNNNNTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCG
AAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCT
TTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCG
ATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTT
TCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTG
CTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATC
CACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTT
GTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGG
ATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAG
ATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAG
TCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAAACC
CATC
Length of 3' end seq. 664
Connected seq. ID VHB386P
Connected seq. 
>VHB386P.Seq
ATTATTTGAAAATCCAGAAGTTTTGGAGTCAAGAAGAACTAAACAAAGAGCTTCCAATTA
TAGAAAAACTCTTGAAAGAGAAAAAGAAGGTATCAAACCATTAGATAATATTTTAGAAGA
ATTAAAAGCAAATGCAAATGGTTTAACAAAAGCTGAAGCTCAAAAAAGATTAGAAGAAGT
TGGACCAAATGCAATTCCAGATGTTAAAAGATATCCAATTTTAGAATTTTTATATTTTAT
GTGGAATCCATTATCATGGACTATGGAAGTTGCAGCTATTGTATCAATTGCATTATTAGA
TTGGGTTGATTTTATATTGATTTGTGCATTATTACTTTTGAATGCAACCATTGGTTTCAT
TGAAGAGAATACAGCAGGTAATGCAGTAGAGGCTTTAAAGAATTCATTGGTTAGTCAAAT
CCGTTGTATGAGAGATGGTGAATGGGTTATGTTACCATCACCAGATCTTGTACCAGGTGA
TGTTGTAATGTTAAAGATTGGTGCCATTATTCCAGCCGATTGTAGAGTTATCGAAGCTGA
ACAAGTTAAAATCGATCAATCTTCATTGACAGGTGAATCTTTACCAGTCACTAAAAAGAT
TGGTGATGAAGTTTACTCTGGTTCAGCAATGAAACAAGGTGAAGCAAA----------TA
AAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTA
TGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTC
ATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTC
GTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTA
GTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGT
CTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCT
TTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTT
GGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAAT
TAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTA
AAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAG
TTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAAACCCATC
Length of connected seq. 1302
Full length Seq ID -
Full length Seq. -
Length of full length seq. -