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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC115
Library VH
(Link to library)
Clone ID VHC115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHC115 (VHC115Q) /CSM/VH/VHC1-A/VHC115Q.Seq.d/
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAACAGGATGATTATGAT
GTAATAGTTTGTGGTGGTGGTCCANTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCT
GGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGT
GATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACAT
GAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGG
ATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCANAAGGTACT
TTATTAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
iilfykl*rk*enf*QDDYDVIVCGGGPXGLATAYRCAKAGKKVLCLEKSVFFNGGGSSG
DVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPXGT
L---
Translated Amino Acid sequence (All Frames) 
Frame A:
iilfykl*rk*enf*QDDYDVIVCGGGPXGLATAYRCAKAGKKVLCLEKSVFFNGGGSSG
DVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPXGT
L---


Frame B:
lfyfisfeenerifnrmimm**fvvvvxlvwllhtdvpklerkyfvsknqyslmevvvvv
mllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvxkvl
y---


Frame C:
yfil*alkkmrefltg*l*cnslwwwsxwfgyciqmcqswkestlsrkisil*wrw**w*
cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsxryf
i---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC115 (VHC115Q) /CSM/VH/VHC1-A/VHC115Q.Seq.d/                        714   0.0
VHQ455 (VHQ455Q) /CSM/VH/VHQ4-C/VHQ455Q.Seq.d/                        690   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                        690   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                        690   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                        690   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                        690   0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/                        690   0.0
VHM372 (VHM372Q) /CSM/VH/VHM3-C/VHM372Q.Seq.d/                        690   0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/                        690   0.0
VHL517 (VHL517Q) /CSM/VH/VHL5-A/VHL517Q.Seq.d/                        690   0.0
own update 2002.12.23
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275.          38   0.049  2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003.          38   0.049  2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277.          38   0.049  2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273.          38   0.049  2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274.          38   0.049  2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276.          38   0.049  2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272.          38   0.049  2
CQ332228|CQ332228.1 Sequence 6322 from Patent WO0157275.           38   0.14   2
CQ295650|CQ295650.1 Sequence 6755 from Patent WO0186003.           38   0.14   2
CQ258287|CQ258287.1 Sequence 6548 from Patent WO0157277.           38   0.14   2
dna update 2007. 4.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   120   1e-26
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...    75   9e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    62   6e-09
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    62   6e-09
BC116493_1(BC116493|pid:none) Danio rerio similar to Peroxisomal...    62   8e-09
BC124587_1(BC124587|pid:none) Danio rerio similar to Peroxisomal...    62   8e-09
BC096805_1(BC096805|pid:none) Danio rerio similar to Peroxisomal...    62   8e-09
CR859295_1(CR859295|pid:none) Pongo abelii mRNA; cDNA DKFZp469L1...    60   2e-08
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    60   3e-08
BC027622_1(BC027622|pid:none) Homo sapiens pipecolic acid oxidas...    60   3e-08
protein update 2009. 6.27
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHC115 is cyt
5' end seq. ID VHC115F
5' end seq. 
>VHC115F.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAACAGGATGATTATGAT
GTAATAGTTTGTGGTGGTGGTCCANTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCT
GGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGT
GATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACAT
GAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGG
ATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCANAAGGTACT
TTATTANNNNNNNNNN
Length of 5' end seq. 376
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -