>VHD642 (VHD642Q) /CSM/VH/VHD6-B/VHD642Q.Seq.d/
ATTCCTGTATTAATAAATATAGATACACATATATATAAACTAAAATGGGTCAAAAGAAAA
AGAAGTTAGCCAAGGGTCGTTTAGATAAGTTTTACTATATGGCCAAAGAGCAAGGTTATA
GATCTCGTGCTGCTTTCAAATTAATTCAATTAAATAAAAAATACAATTTTTTGGGTACCG
CAAAAGCTTGTTTAGATCTTTGTGCTGCACCAGGTGGTTGGATGCAAGTTGCATCAAAAT
ATATGCCAGTTCAATCATTAATTGTTGGTGTAGATTTAGTACCAATTAGACAAGTTAGAA
ATTGTATTGGTTTAACAGAAGATATTACAACACAAAAGTGTAGAACAGAGATTAAAAAAG
CATTGAAAACATGGAAAGTTGATGTATGTTTACATGATGGTGCACCAAATATGGGTACAT
CATGGGTACAAGATGCATATCAACAAGCGGAATTAACTTTACATGCATTAAAGTTGGCAA
CTGAATTCCTTACTACTGGTGGTTGGTTTGTAACTAAAGTTTTCAGAGGCTCAGATTATA
ATTCATTGATTTGGGTATTCAACAAACTCTTTAAAAAAGTTGAATCTACTAAACCACCAT
CATCACGTAATGCATCAGCXXXXXXXXXX

scinkyrytyi*TKMGQKKKKLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTA
KACLDLCAAPGGWMQVASKYMPVQSLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKA
LKTWKVDVCLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYN
SLIWVFNKLFKKVESTKPPSSRNAS---

Frame A:
ipvlinidthiyklkwvkrkrs*prvv*isftiwpkskvidlvllsn*fn*ikntifwvp
qklv*ifvlhqvvgcklhqnicqfnh*llv*i*yqldkleivlv*qkilqhksveqrlkk
h*khgklmyvymmvhqiwvhhgykmhinkrn*lymh*swqlnslllvvgl*lkfseaqii
ih*fgystnslkklnllnhhhhvmhq---


Frame B:
fly**i*ihiyin*ngskekevsqgsfr*vllygqrarl*isccfqinsik*kiqffgyr
kslfrslcctrwldascikiyassiincwcrfstn*ts*klywfnrryyntkv*nrd*ks
ienmes*cmft*wctkygyimgtrcistsginftcikvgn*ipyywwlvcn*sfqrlrl*
fidlgiqqtl*ks*iy*ttiit*ci---


Frame C:
scinkyrytyi*TKMGQKKKKLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTA
KACLDLCAAPGGWMQVASKYMPVQSLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKA
LKTWKVDVCLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYN
SLIWVFNKLFKKVESTKPPSSRNAS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE308 (VHE308Q) /CSM/VH/VHE3-A/VHE308Q.Seq.d/                       1227   0.0
VHD642 (VHD642Q) /CSM/VH/VHD6-B/VHD642Q.Seq.d/                       1227   0.0
VHA530 (VHA530Q) /CSM/VH/VHA5-B/VHA530Q.Seq.d/                       1227   0.0
VHA378 (VHA378Q) /CSM/VH/VHA3-D/VHA378Q.Seq.d/                       1227   0.0
VFN895 (VFN895Q) /CSM/VF/VFN8-D/VFN895Q.Seq.d/                       1221   0.0
AHJ320 (AHJ320Q) /CSM/AH/AHJ3-A/AHJ320Q.Seq.d/                       1215   0.0
VFO355 (VFO355Q) /CSM/VF/VFO3-C/VFO355Q.Seq.d/                       1209   0.0
VHH246 (VHH246Q) /CSM/VH/VHH2-B/VHH246Q.Seq.d/                       1168   0.0
VHB317 (VHB317Q) /CSM/VH/VHB3-A/VHB317Q.Seq.d/                       1160   0.0
VHJ295 (VHJ295Q) /CSM/VH/VHJ2-D/VHJ295Q.Seq.d/                       1051   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR549455|AR549455.1 Sequence 4586 from patent US 6747137.          68   5e-17  5
DB747335|DB747335.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10068H24, 5' end partial sequence.    56   5e-15  5
AX488917|AX488917.1 Sequence 6217 from Patent WO02053728.          68   5e-13  4
BQ640813|BQ640813.1 TVEST006.B12 Tv30236_PT cDNA Library Trichomonas vaginalis cDNA 5' similar to NEUROSPORA CRASSA CONSERVED HYPOTHETICAL PROTEIN, mRNA sequence.    62   6e-13  2
BQ621473|BQ621473.1 TVEST006.B01 Tv30236_PT cDNA Library Trichomonas vaginalis cDNA 5', mRNA sequence.    62   6e-13  2
DT662586|DT662586.3 He_wd2a1_74D09_M13R Heliconius erato wing disk 2 Heliconius erato cDNA clone He_wd2a1_74D09 5' similar to UniRef90_UPI000051A2A9 Cluster related to UPI000051A2A9; PREDICTED: similar to CG8939-PA. Score = 386 bits (991), Expect = e-106, mRNA sequence.    44   1e-12  5
CB284695|CB284695.1 DF1483 Dermatophagoides farinae cDNA library Dermatophagoides farinae cDNA, mRNA sequence.    56   1e-12  4
EE133491|EE133491.1 SiJWH07ADU Lausanne fire ant library Solenopsis invicta cDNA, mRNA sequence.    46   2e-12  4
EL596939|EL596939.1 He_pwd_0169E02_M13R Heliconius erato pooled wing disc library Heliconius erato/himera mixed EST library cDNA clone He_pwd_0169E02 5' similar to UniRef90_UPI0000D56FDD Cluster: PREDICTED: similar to CG8939-PA castaneum Tribolium castaneum, E-value = 1e-103, mRNA sequence.    36   2e-10  5
AJ223010|AJ223010.1 Schizosaccharomyces pombe pmt2 gene.           46   5e-09  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NX0) RecName: Full=rRNA methyltransferase 3 homolog;        ...   365   e-100
(Q4P6G5) RecName: Full=AdoMet-dependent rRNA methyltransferase S...   269   6e-71
(Q5ZKM1) RecName: Full=Putative rRNA methyltransferase 3;       ...   255   6e-67
(Q9P6V8) RecName: Full=AdoMet-dependent rRNA methyltransferase s...   253   3e-66
T48834(T48834)hypothetical protein 68B2.180 [imported] - Neurosp...   253   3e-66
(O42832) RecName: Full=AdoMet-dependent rRNA methyltransferase s...   249   3e-65
AP007166_278(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...   248   1e-64
(Q5RAS1) RecName: Full=Putative rRNA methyltransferase 3;       ...   248   1e-64
AK027463_1(AK027463|pid:none) Homo sapiens cDNA FLJ14557 fis, cl...   248   1e-64
AB173423_1(AB173423|pid:none) Macaca fascicularis brain cDNA clo...   248   1e-64

 psg: 0.43  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for VHD642 is nuc

>VHD642F.Seq
ATTCCTGTATTAATAAATATAGATACACATATATATAAACTAAAATGGGTCAAAAGAAAA
AGAAGTTAGCCAAGGGTCGTTTAGATAAGTTTTACTATATGGCCAAAGAGCAAGGTTATA
GATCTCGTGCTGCTTTCAAATTAATTCAATTAAATAAAAAATACAATTTTTTGGGTACCG
CAAAAGCTTGTTTAGATCTTTGTGCTGCACCAGGTGGTTGGATGCAAGTTGCATCAAAAT
ATATGCCAGTTCAATCATTAATTGTTGGTGTAGATTTAGTACCAATTAGACAAGTTAGAA
ATTGTATTGGTTTAACAGAAGATATTACAACACAAAAGTGTAGAACAGAGATTAAAAAAG
CATTGAAAACATGGAAAGTTGATGTATGTTTACATGATGGTGCACCAAATATGGGTACAT
CATGGGTACAAGATGCATATCAACAAGCGGAATTAACTTTACATGCATTAAAGTTGGCAA
CTGAATTCCTTACTACTGGTGGTTGGTTTGTAACTAAAGTTTTCAGAGGCTCAGATTATA
ATTCATTGATTTGGGTATTCAACAAACTCTTTAAAAAAGTTGAATCTACTAAACCACCAT
CATCACGTAATGCATCAGCNNNNNNNNNN