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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD682
Library VH
(Link to library)
Clone ID VHD682
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHD682P
(Link to Original site)
Representative DNA sequence 
>VHD682 (VHD682Q) /CSM/VH/VHD6-D/VHD682Q.Seq.d/
AAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAAT
TTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTG
CATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTA
ATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATT
ATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTG
GTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTG
CAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGC
AATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCAT
CCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTAC
GTTCTCTTTACAAGTTATGTTTACAXXXXXXXXXXTGAAGTTCACAATGTTCCAGTCGNT
ACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAATGATGATTATTCA
TCAGGNGCATTTGCTNTTTACAGTCCATCACAATTTTTTCAATTGTTCCCATCNCTTANT
AAACCATCNCCAGATGGTAGATTCCATTTAGNNGGTGAAGCAACATNTGTTCATCATGGT
TGGGTCATTGGTTTTTTTAACTNTGCCTATCGTTCAGTCGATCNCATTTTTCAAGTTGAA
GGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATCGATGAAGTTGAA
GATCCTCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNT
AAAAAATTCAGATCAAATGTATCNCAAGTTGCCATTCAACCAAGATTCAAAGCTCCAANA
AACTTTAAACCAANAAATACTGCTGCTAGTATTGGTGGTNTTAAATAAATCAAAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
ifflffyyfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFN
GGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGA
GGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLR
SLYKLCL---

---EVHNVPVXTLQQLFVDYKCWDWYNDDYSSGAFAXYSPSQFFQLFPSLXKPSPDGRFH
LXGEATXVHHGWVIGFFNXAYRSVDXIFQVEGXDELRAKLRXNWGFIDEVEDPQXDQQYV
DPHXNLSGPNXKKFRSNVSQVAIQPRFKAPXNFKPXNTAASIGGXK*ikt
Translated Amino Acid sequence (All Frames) 
Frame A:
ksffyffiilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqysl
mevvvvvmllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimv
qvvqkvly*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyy
vlftsyvy---

---*ssqcssrypptiic*lqmlglv***lfirxicxlqsitifsivpixx*tixrw*ip
fxx*snxcsswlghwff*lclsfsrshfss*rx**vtxqitxqlgfhr*s*rssx*stic
*pxsqfkwskx*kiqikcixschstkiqssxkl*txkycc*ywwx*inqn

Frame B:
nlffifllfyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*
wrw**w*cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwc
rwsrryfirtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigit
fslqvmft---

---EVHNVPVXTLQQLFVDYKCWDWYNDDYSSGAFAXYSPSQFFQLFPSLXKPSPDGRFH
LXGEATXVHHGWVIGFFNXAYRSVDXIFQVEGXDELRAKLRXNWGFIDEVEDPQXDQQYV
DPHXNLSGPNXKKFRSNVSQVAIQPRFKAPXNFKPXNTAASIGGXK*ikt

Frame C:
ifflffyyfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFN
GGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGA
GGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLR
SLYKLCL---

---kftmfqsxpsnnyllitnvgigimmiihqxhllftvhhnffncshxlxnhxqmvdsi
*xvkqhxfimvgslvfltxpivqsixffklkvlmsyxpnyvsigvssmklkilxminnml
txixi*vvqmxknsdqmyxklpfnqdsklqxtlnqxilllvlvvlnksk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1053   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1053   0.0
VHQ355 (VHQ355Q) /CSM/VH/VHQ3-C/VHQ355Q.Seq.d/                       1053   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1053   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1053   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1053   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                       1053   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1053   0.0
VHM668 (VHM668Q) /CSM/VH/VHM6-C/VHM668Q.Seq.d/                       1053   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                       1053   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces.    40   0.084  4
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275.          38   0.41   2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003.          38   0.41   2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277.          38   0.41   2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273.          38   0.41   2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274.          38   0.41   2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276.          38   0.41   2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272.          38   0.41   2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence.    48   0.53   1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence.    48   0.53   1
dna update 2007. 6.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   199   1e-49
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   108   2e-22
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    75   3e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    75   3e-12
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    75   4e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    75   5e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    75   5e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    75   5e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    75   5e-12
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    74   9e-12
protein update 2009. 6.29
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VHD682 is cyt
5' end seq. ID VHD682F
5' end seq. 
>VHD682F.Seq
AAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAAT
TTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTG
CATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTA
ATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATT
ATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTG
GTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTG
CAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGC
AATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCAT
CCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTAC
GTTCTCTTTACAAGTTATGTTTACANNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID VHD682Z
3' end seq. 
>VHD682Z.Seq
NNNNNNNNNNTGAAGTTCACAATGTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATT
ACAAATGTTGGGATTGGTATAATGATGATTATTCATCAGGNGCATTTGCTNTTTACAGTC
CATCACAATTTTTTCAATTGTTCCCATCNCTTANTAAACCATCNCCAGATGGTAGATTCC
ATTTAGNNGGTGAAGCAACATNTGTTCATCATGGTTGGGTCATTGGTTTTTTTAACTNTG
CCTATCGTTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAAT
TACGTNTCAATTGGGGTTTCATCGATGAAGTTGAAGATCCTCAANATGATCAACAATATG
TTGACCCNCATCNCAATTTAAGTGGTCCAAATGNTAAAAAATTCAGATCAAATGTATCNC
AAGTTGCCATTCAACCAAGATTCAAAGCTCCAANAAACTTTAAACCAANAAATACTGCTG
CTAGTATTGGTGGTNTTAAATAAATCAAAACC
Length of 3' end seq. 512
Connected seq. ID VHD682P
Connected seq. 
>VHD682P.Seq
AAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAAT
TTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTG
CATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTA
ATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATT
ATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTG
GTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTG
CAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGC
AATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCAT
CCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTAC
GTTCTCTTTACAAGTTATGTTTACA----------TGAAGTTCACAATGTTCCAGTCGNT
ACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAATGATGATTATTCA
TCAGGNGCATTTGCTNTTTACAGTCCATCACAATTTTTTCAATTGTTCCCATCNCTTANT
AAACCATCNCCAGATGGTAGATTCCATTTAGNNGGTGAAGCAACATNTGTTCATCATGGT
TGGGTCATTGGTTTTTTTAACTNTGCCTATCGTTCAGTCGATCNCATTTTTCAAGTTGAA
GGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATCGATGAAGTTGAA
GATCCTCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNT
AAAAAATTCAGATCAAATGTATCNCAAGTTGCCATTCAACCAAGATTCAAAGCTCCAANA
AACTTTAAACCAANAAATACTGCTGCTAGTATTGGTGGTNTTAAATAAATCAAAACC
Length of connected seq. 1067
Full length Seq ID -
Full length Seq. -
Length of full length seq. -