VHD682
Library VH
(Link to library)
Clone ID VHD682
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHD682P
(Link to Original site)
Representative DNA sequence
>VHD682 (VHD682Q) /CSM/VH/VHD6-D/VHD682Q.Seq.d/
AAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAAT
TTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTG
CATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTA
ATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATT
ATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTG
GTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTG
CAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGC
AATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCAT
CCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTAC
GTTCTCTTTACAAGTTATGTTTACAXXXXXXXXXXTGAAGTTCACAATGTTCCAGTCGNT
ACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAATGATGATTATTCA
TCAGGNGCATTTGCTNTTTACAGTCCATCACAATTTTTTCAATTGTTCCCATCNCTTANT
AAACCATCNCCAGATGGTAGATTCCATTTAGNNGGTGAAGCAACATNTGTTCATCATGGT
TGGGTCATTGGTTTTTTTAACTNTGCCTATCGTTCAGTCGATCNCATTTTTCAAGTTGAA
GGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATCGATGAAGTTGAA
GATCCTCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNT
AAAAAATTCAGATCAAATGTATCNCAAGTTGCCATTCAACCAAGATTCAAAGCTCCAANA
AACTTTAAACCAANAAATACTGCTGCTAGTATTGGTGGTNTTAAATAAATCAAAACC
sequence update 2002.10.25
Translated Amino Acid sequence
ifflffyyfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFN
GGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGA
GGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLR
SLYKLCL---

---EVHNVPVXTLQQLFVDYKCWDWYNDDYSSGAFAXYSPSQFFQLFPSLXKPSPDGRFH
LXGEATXVHHGWVIGFFNXAYRSVDXIFQVEGXDELRAKLRXNWGFIDEVEDPQXDQQYV
DPHXNLSGPNXKKFRSNVSQVAIQPRFKAPXNFKPXNTAASIGGXK*ikt


Translated Amino Acid sequence (All Frames)
Frame A:
ksffyffiilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqysl
mevvvvvmllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimv
qvvqkvly*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyy
vlftsyvy---

---*ssqcssrypptiic*lqmlglv***lfirxicxlqsitifsivpixx*tixrw*ip
fxx*snxcsswlghwff*lclsfsrshfss*rx**vtxqitxqlgfhr*s*rssx*stic
*pxsqfkwskx*kiqikcixschstkiqssxkl*txkycc*ywwx*inqn

Frame B:
nlffifllfyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*
wrw**w*cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwc
rwsrryfirtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigit
fslqvmft---

---EVHNVPVXTLQQLFVDYKCWDWYNDDYSSGAFAXYSPSQFFQLFPSLXKPSPDGRFH
LXGEATXVHHGWVIGFFNXAYRSVDXIFQVEGXDELRAKLRXNWGFIDEVEDPQXDQQYV
DPHXNLSGPNXKKFRSNVSQVAIQPRFKAPXNFKPXNTAASIGGXK*ikt

Frame C:
ifflffyyfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFN
GGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGA
GGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLR
SLYKLCL---

---kftmfqsxpsnnyllitnvgigimmiihqxhllftvhhnffncshxlxnhxqmvdsi
*xvkqhxfimvgslvfltxpivqsixffklkvlmsyxpnyvsigvssmklkilxminnml
txixi*vvqmxknsdqmyxklpfnqdsklqxtlnqxilllvlvvlnksk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1053 0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 1053 0.0
VHQ355 (VHQ355Q) /CSM/VH/VHQ3-C/VHQ355Q.Seq.d/ 1053 0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 1053 0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 1053 0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 1053 0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/ 1053 0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/ 1053 0.0
VHM668 (VHM668Q) /CSM/VH/VHM6-C/VHM668Q.Seq.d/ 1053 0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/ 1053 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces. 40 0.084 4
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275. 38 0.41 2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003. 38 0.41 2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277. 38 0.41 2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273. 38 0.41 2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274. 38 0.41 2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276. 38 0.41 2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272. 38 0.41 2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence. 48 0.53 1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence. 48 0.53 1
dna update 2007. 6.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 199 1e-49
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 108 2e-22
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 75 3e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 75 3e-12
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 75 4e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 75 5e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 75 5e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 75 5e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 75 5e-12
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 74 9e-12
protein update 2009. 6.29
PSORT

psg: 0.67 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for VHD682 is cyt

5' end seq. ID VHD682F
5' end seq.
>VHD682F.Seq
AAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAAT
TTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTG
CATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTA
ATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATT
ATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTG
GTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTG
CAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGC
AATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCAT
CCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTAC
GTTCTCTTTACAAGTTATGTTTACANNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID VHD682Z
3' end seq.
>VHD682Z.Seq
NNNNNNNNNNTGAAGTTCACAATGTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATT
ACAAATGTTGGGATTGGTATAATGATGATTATTCATCAGGNGCATTTGCTNTTTACAGTC
CATCACAATTTTTTCAATTGTTCCCATCNCTTANTAAACCATCNCCAGATGGTAGATTCC
ATTTAGNNGGTGAAGCAACATNTGTTCATCATGGTTGGGTCATTGGTTTTTTTAACTNTG
CCTATCGTTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAAT
TACGTNTCAATTGGGGTTTCATCGATGAAGTTGAAGATCCTCAANATGATCAACAATATG
TTGACCCNCATCNCAATTTAAGTGGTCCAAATGNTAAAAAATTCAGATCAAATGTATCNC
AAGTTGCCATTCAACCAAGATTCAAAGCTCCAANAAACTTTAAACCAANAAATACTGCTG
CTAGTATTGGTGGTNTTAAATAAATCAAAACC
Length of 3' end seq. 512
Connected seq. ID VHD682P
Connected seq.
>VHD682P.Seq
AAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAAT
TTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTG
CATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTA
ATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATT
ATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTG
GTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTG
CAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGC
AATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCAT
CCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTAC
GTTCTCTTTACAAGTTATGTTTACA----------TGAAGTTCACAATGTTCCAGTCGNT
ACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAATGATGATTATTCA
TCAGGNGCATTTGCTNTTTACAGTCCATCACAATTTTTTCAATTGTTCCCATCNCTTANT
AAACCATCNCCAGATGGTAGATTCCATTTAGNNGGTGAAGCAACATNTGTTCATCATGGT
TGGGTCATTGGTTTTTTTAACTNTGCCTATCGTTCAGTCGATCNCATTTTTCAAGTTGAA
GGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATCGATGAAGTTGAA
GATCCTCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNT
AAAAAATTCAGATCAAATGTATCNCAAGTTGCCATTCAACCAAGATTCAAAGCTCCAANA
AACTTTAAACCAANAAATACTGCTGCTAGTATTGGTGGTNTTAAATAAATCAAAACC
Length of connected seq. 1067
Full length Seq ID -
Full length Seq. -
Length of full length seq. -