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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD896
Library VH
(Link to library)
Clone ID VHD896
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID VHD896P
(Link to Original site)
Representative DNA sequence 
>VHD896 (VHD896Q) /CSM/VH/VHD8-D/VHD896Q.Seq.d/
AATTTCAAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATA
TTTATTTATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTA
GTATAAAAAAAAAAXXXXXXXXXXTTAGGTGGTGGTGGTGGTGGTGGTAAAGTTCAAGCA
CCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTGGA
GCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTCAA
CAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCT
GATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCA
ATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGATG
GTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTATTG
ACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAGAA
TCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTATC
CTTCGTCGTTTAAATAGTAAGAATATCTTTGANATCG
sequence update 2002.10.25
Translated Amino Acid sequence 
fqinthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---LGGGGGGGKVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSK
FKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVIDMAMMVLPSQ
ERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSILRRLN
SKNIFXI
Translated Amino Acid sequence (All Frames) 
Frame A:
nfkltrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---LGGGGGGGKVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSK
FKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVIDMAMMVLPSQ
ERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSILRRLN
SKNIFXI

Frame B:
isn*hahiikili*siknlylfiyniflrglqytikvly*ykkk---

---*vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*if*iqvnkvcqn
srfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqsliwq*wyyqvk
rdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm*mltlsfvv*i
vrislxs

Frame C:
fqinthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---rwwwwww*sssts**scciww**itsnsn*wsiykipr*n*friksfeykstryvki
qdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygndgitksr
eill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*lypssfk*
*eyl*x
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP238 (VHP238Q) /CSM/VH/VHP2-B/VHP238Q.Seq.d/                       1043   0.0
VHM229 (VHM229Q) /CSM/VH/VHM2-B/VHM229Q.Seq.d/                       1043   0.0
VHD896 (VHD896Q) /CSM/VH/VHD8-D/VHD896Q.Seq.d/                       1043   0.0
VHB374 (VHB374Q) /CSM/VH/VHB3-D/VHB374Q.Seq.d/                       1043   0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/                       1043   0.0
SHG413 (SHG413Q) /CSM/SH/SHG4-A/SHG413Q.Seq.d/                       1043   0.0
SHF674 (SHF674Q) /CSM/SH/SHF6-D/SHF674Q.Seq.d/                       1043   0.0
SHF453 (SHF453Q) /CSM/SH/SHF4-C/SHF453Q.Seq.d/                       1043   0.0
SHD872 (SHD872Q) /CSM/SH/SHD8-C/SHD872Q.Seq.d/                       1043   0.0
SHD615 (SHD615Q) /CSM/SH/SHD6-A/SHD615Q.Seq.d/                       1043   0.0
own update 2004. 5.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC187854|AC187854.2 Populus trichocarpa clone Pop1-11B14, complete sequence.    38   0.22   5
CX072513|CX072513.1 UCRCS08_28E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-4.g, mRNA sequence.    46   1.3    1
CX072512|CX072512.1 UCRCS08_28E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-5.b, mRNA sequence.    46   1.3    1
ER400257|ER400257.1 1095349054847 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061005430691 5', genomic survey sequence.    46   1.3    1
EJ807179|EJ807179.1 1093017468100 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002728084 5', genomic survey sequence.    46   1.3    1
EJ328016|EJ328016.1 1092963405361 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002327787 5', genomic survey sequence.    46   1.3    1
AC138052|AC138052.2 Felis catus clone RP86-222L20, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38   1.5    3
DQ280172|DQ280172.1 Muntiacus muntjak vaginalis chromosome 3+X clone 09A2, *** SEQUENCING IN PROGRESS ***, 25 ordered pieces.    44   5.3    1
EK406240|EK406240.1 1095505004860 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005887983 5', genomic survey sequence.    44   5.3    1
EJ194274|EJ194274.1 1092344223844 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001541587 5', genomic survey sequence.    44   5.3    1
dna update 2007. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   345   8e-94
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   105   1e-21
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   105   1e-21
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   105   1e-21
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   105   1e-21
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   105   1e-21
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   105   1e-21
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   105   1e-21
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   105   2e-21
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   104   3e-21
protein update 2009. 6.30
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: -0.05  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: vesicles of secretory system
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for VHD896 is nuc
5' end seq. ID VHD896F
5' end seq. 
>VHD896F.Seq
AATTTCAAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATA
TTTATTTATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTA
GTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 144
3' end seq. ID VHD896Z
3' end seq. 
>VHD896Z.Seq
NNNNNNNNNNTTAGGTGGTGGTGGTGGTGGTGGTAAAGTTCAAGCACCAGTTAATAAAGT
TGTTGTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTGGAGCATTTACAAGATT
CCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAA
ATTCAAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATC
ATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGG
TCAAATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCA
AGAGAGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCG
TCTCGATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTC
AGTTGAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTATCCTTCGTCGTTTAAA
TAGTAAGAATATCTTTGANATCG
Length of 3' end seq. 563
Connected seq. ID VHD896P
Connected seq. 
>VHD896P.Seq
AATTTCAAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATA
TTTATTTATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTA
GTATAAAAAAAAAA----------TTAGGTGGTGGTGGTGGTGGTGGTAAAGTTCAAGCA
CCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTGGA
GCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTCAA
CAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCT
GATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCA
ATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGATG
GTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTATTG
ACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAGAA
TCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTATC
CTTCGTCGTTTAAATAGTAAGAATATCTTTGANATCG
Length of connected seq. 687
Full length Seq ID -
Full length Seq. -
Length of full length seq. -