VHE138
Library VH
(Link to library)
Clone ID VHE138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15767-1
Original site URL
Representative seq. ID VHE138P
(Link to Original site)
Representative DNA sequence
>VHE138 (VHE138Q) /CSM/VH/VHE1-B/VHE138Q.Seq.d/
TATTTTACCACTCATCAAAAAACAACAAATAAAAAATAAGAAAGTCTAAAATATTAAAAG
AATAAAAAAAATATATACAATAAAATAAAAAAACAAAATGTTCATTCAAAGAACATTTTT
AAAAGTTCTTACTCTTTTGAGTATAGTAACAGTTTTGGTCCATGGACAAACTCAACCAAA
AGATAAAATTACATTGAAGGCCGTAATTTATGATCAACACAAGTTTTATAATCCAAATTT
CCAACCAAAAAATGAGGGAGAATTTGTTTTAACTAAGGGAATTGTCAAATCAGATATTGA
TCAAGAAAAAAGAATTCCAGTTTTAAATAGTATGGATGCCAATGATTCTATAAATAAAAA
GGCAAGAATTAGTTGGCCAGATGGTTTTAAGTATTTTTTTGTAGATAACCAAGCTGGTGA
TTCANAATCTGCCAAATCTGGTAAAAATCTTCCAATTCAAAGAGATATCGAGTTAAATTG
GAATGGAGAAGCATATGAATATAGTAATTCAAATTACTTCCCAATTAACGGACAAGGTTT
CAATGATGTAAGCTATCCAXXXXXXXXXXCAAGTTACATGTGGTGGTTGTGAAACCTGTT
CATACGCTACCGGTAAATGTGAACCAGATAGTTCACTTTGTAATGATAACAATATTTGTA
CCATTGATATTTGTGTCCATGAAGGTATTCTCGATGGTCTACCACAAGGTAATTGTTCAA
ATACTCCAGTTGATTGTGGTGCCAATGATGAAGATAAATGTAAAACTTGGTCTTGTGATC
CAACTAAAGGTGGCTGTCAATCAACCCCAGTCGTCTGTGAAGATAAAGGTAAATGTTTAG
TTGGTACTTGTCAACCATCCACTGGTCAATGTGAATACTCTGATAGAGTTTGTGATAATG
GTGGTGCTTTCTGTGTTATTGGCCAATGTGATCAAAGACTTGGTTGTTTAGTTTTCGATA
GAGTTTGTTCATCTGATAATAGTAGATGTGAAGAAGGTGTTTGTGTAAATGGTACTGAAT
CTGAAGAAGGTCATTGTAAATCTGTTAAATATGACCCATTACCATTCAATTGTAATACTG
GTGCTGTTGTTTCAACTGCTGTTATTGCTGGTTNTACTGTCGCTGGTGCTGTTGCTCTTG
GTATTTTCCTANAANNANNNAAAAAANNNTANGCCTATTG
sequence update 2002.10.25
Translated Amino Acid sequence
ilplikkqqiknkkv*nikrikkiytik*KNKMFIQRTFLKVLTLLSIVTVLVHGQTQPK
DKITLKAVIYDQHKFYNPNFQPKNEGEFVLTKGIVKSDIDQEKRIPVLNSMDANDSINKK
ARISWPDGFKYFFVDNQAGDSXSAKSGKNLPIQRDIELNWNGEAYEYSNSNYFPINGQGF
NDVSYP---

---QVTCGGCETCSYATGKCEPDSSLCNDNNICTIDICVHEGILDGLPQGNCSNTPVDCG
ANDEDKCKTWSCDPTKGGCQSTPVVCEDKGKCLVGTCQPSTGQCEYSDRVCDNGGAFCVI
GQCDQRLGCLVFDRVCSSDNSRCEEGVCVNGTESEEGHCKSVKYDPLPFNCNTGAVVSTA
VIAGXTVAGAVALGIFLXXXKKXXAY


Translated Amino Acid sequence (All Frames)
Frame A:
yftthqkttnkk*eslky*knkkniynkikkqnvhsknifkssysfeysnsfgpwtnstk
r*nyiegrnl*stqvl*skfptkk*gricfn*gncqiry*srkknssfk*ygcq*fyk*k
gkn*larwf*vffcr*psw*fxicqiw*kssnskryrvklewrsi*i**fkllpn*rtrf
q*ckls---

---QVTCGGCETCSYATGKCEPDSSLCNDNNICTIDICVHEGILDGLPQGNCSNTPVDCG
ANDEDKCKTWSCDPTKGGCQSTPVVCEDKGKCLVGTCQPSTGQCEYSDRVCDNGGAFCVI
GQCDQRLGCLVFDRVCSSDNSRCEEGVCVNGTESEEGHCKSVKYDPLPFNCNTGAVVSTA
VIAGXTVAGAVALGIFLXXXKKXXAY

Frame B:
ilplikkqqiknkkv*nikrikkiytik*KNKMFIQRTFLKVLTLLSIVTVLVHGQTQPK
DKITLKAVIYDQHKFYNPNFQPKNEGEFVLTKGIVKSDIDQEKRIPVLNSMDANDSINKK
ARISWPDGFKYFFVDNQAGDSXSAKSGKNLPIQRDIELNWNGEAYEYSNSNYFPINGQGF
NDVSYP---

---klhvvvvkpvhtlpvnvnqivhfvmitifvplifvsmkvfsmvyhkvivqilqlivv
pmmkinvklglviqlkvavnqpqssvkikvnv*lvlvnhplvnvntliefvimvvlsvll
anvikdlvv*fsiefvhliivdvkkvfv*mvlnlkkvivnllnmthyhsivilvllfqll
lllvxlslvllllvfsxxxxkxxxpi

Frame C:
fyhssknnk*kirkskilke*kkyiq*nkktkcsfkehf*kfllf*v**qfwsmdklnqk
iklh*rp*fmintsfiiqisnqkmrenlf*lrelsnqilikkkefqf*ivwmpmil*ikr
qelvgqmvlsifl*itklvixnlpnlvkifqfkeiss*igmekhmniviqitsqltdkvs
mm*ai---

---symwwl*nlfiryr*m*tr*ftl***qylyh*ylcp*rysrwsttr*lfkyss*lwc
q**r*m*nlvl*sn*rwlsinpsrl*r*r*mfswylstihwsm*il**sl**wwcflcyw
pm*sktwlfsfr*slfi****m*rrclckwy*i*rrsl*ic*i*pitiql*ywcccfncc
ycwxycrwcccswyfpxxxxkxxxll

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE138 (VHE138Q) /CSM/VH/VHE1-B/VHE138Q.Seq.d/ 1974 0.0
VHC841 (VHC841Q) /CSM/VH/VHC8-B/VHC841Q.Seq.d/ 1957 0.0
AHH352 (AHH352Q) /CSM/AH/AHH3-C/AHH352Q.Seq.d/ 1140 0.0
VHQ393 (VHQ393Q) /CSM/VH/VHQ3-D/VHQ393Q.Seq.d/ 1138 0.0
VHP613 (VHP613Q) /CSM/VH/VHP6-A/VHP613Q.Seq.d/ 1138 0.0
VHM522 (VHM522Q) /CSM/VH/VHM5-A/VHM522Q.Seq.d/ 1138 0.0
VHL810 (VHL810Q) /CSM/VH/VHL8-A/VHL810Q.Seq.d/ 1138 0.0
VHI218 (VHI218Q) /CSM/VH/VHI2-A/VHI218Q.Seq.d/ 1138 0.0
VHA622 (VHA622Q) /CSM/VH/VHA6-A/VHA622Q.Seq.d/ 1138 0.0
VHA321 (VHA321Q) /CSM/VH/VHA3-A/VHA321Q.Seq.d/ 1138 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 137 6e-28 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 94 9e-20 2
EJ898976|EJ898976.1 1093018479520 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002740139 3', genomic survey sequence. 38 2.2 2
EK330949|EK330949.1 1095467023608 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005758584 5', genomic survey sequence. 42 2.2 2
EJ891606|EJ891606.1 1093018445536 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002740139 5', genomic survey sequence. 38 2.3 2
CT851768|CT851768.1 Oryza sativa (indica cultivar-group) EST sequence:OSIGCSN079I08. 46 2.3 1
CI344920|CI344920.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J02B3034O04M3, 3'end of J023034O04. 46 2.3 1
BI982983|BI982983.1 fu57e12.x1 zebrafish adult brain Danio rerio cDNA clone 5333495 3', mRNA sequence. 46 2.3 1
BI428715|BI428715.1 fr72c02.x1 zebrafish adult brain Danio rerio cDNA clone 4966251 3', mRNA sequence. 46 2.3 1
AP008213|AP008213.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7. 46 2.3 1
dna update 2007. 6.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 389 e-107
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 166 1e-39
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 165 3e-39
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 152 2e-35
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 148 4e-34
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 99 2e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 86 3e-15
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 85 4e-15
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 82 3e-14
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 80 1e-13
protein update 2009. 6.30
PSORT

psg: 0.84 gvh: 0.70 alm: 0.26 top: 0.37 tms: 0.13 mit: 0.40 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
32.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: nuclear
4.0 %: peroxisomal
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHE138 is end

5' end seq. ID VHE138F
5' end seq.
>VHE138F.Seq
TATTTTACCACTCATCAAAAAACAACAAATAAAAAATAAGAAAGTCTAAAATATTAAAAG
AATAAAAAAAATATATACAATAAAATAAAAAAACAAAATGTTCATTCAAAGAACATTTTT
AAAAGTTCTTACTCTTTTGAGTATAGTAACAGTTTTGGTCCATGGACAAACTCAACCAAA
AGATAAAATTACATTGAAGGCCGTAATTTATGATCAACACAAGTTTTATAATCCAAATTT
CCAACCAAAAAATGAGGGAGAATTTGTTTTAACTAAGGGAATTGTCAAATCAGATATTGA
TCAAGAAAAAAGAATTCCAGTTTTAAATAGTATGGATGCCAATGATTCTATAAATAAAAA
GGCAAGAATTAGTTGGCCAGATGGTTTTAAGTATTTTTTTGTAGATAACCAAGCTGGTGA
TTCANAATCTGCCAAATCTGGTAAAAATCTTCCAATTCAAAGAGATATCGAGTTAAATTG
GAATGGAGAAGCATATGAATATAGTAATTCAAATTACTTCCCAATTAACGGACAAGGTTT
CAATGATGTAAGCTATCCANNNNNNNNNN
Length of 5' end seq. 569
3' end seq. ID VHE138Z
3' end seq.
>VHE138Z.Seq
NNNNNNNNNNCAAGTTACATGTGGTGGTTGTGAAACCTGTTCATACGCTACCGGTAAATG
TGAACCAGATAGTTCACTTTGTAATGATAACAATATTTGTACCATTGATATTTGTGTCCA
TGAAGGTATTCTCGATGGTCTACCACAAGGTAATTGTTCAAATACTCCAGTTGATTGTGG
TGCCAATGATGAAGATAAATGTAAAACTTGGTCTTGTGATCCAACTAAAGGTGGCTGTCA
ATCAACCCCAGTCGTCTGTGAAGATAAAGGTAAATGTTTAGTTGGTACTTGTCAACCATC
CACTGGTCAATGTGAATACTCTGATAGAGTTTGTGATAATGGTGGTGCTTTCTGTGTTAT
TGGCCAATGTGATCAAAGACTTGGTTGTTTAGTTTTCGATAGAGTTTGTTCATCTGATAA
TAGTAGATGTGAAGAAGGTGTTTGTGTAAATGGTACTGAATCTGAAGAAGGTCATTGTAA
ATCTGTTAAATATGACCCATTACCATTCAATTGTAATACTGGTGCTGTTGTTTCAACTGC
TGTTATTGCTGGTTNTACTGTCGCTGGTGCTGTTGCTCTTGGTATTTTCCTANAANNANN
NAAAAAANNNTANGCCTATTG
Length of 3' end seq. 621
Connected seq. ID VHE138P
Connected seq.
>VHE138P.Seq
TATTTTACCACTCATCAAAAAACAACAAATAAAAAATAAGAAAGTCTAAAATATTAAAAG
AATAAAAAAAATATATACAATAAAATAAAAAAACAAAATGTTCATTCAAAGAACATTTTT
AAAAGTTCTTACTCTTTTGAGTATAGTAACAGTTTTGGTCCATGGACAAACTCAACCAAA
AGATAAAATTACATTGAAGGCCGTAATTTATGATCAACACAAGTTTTATAATCCAAATTT
CCAACCAAAAAATGAGGGAGAATTTGTTTTAACTAAGGGAATTGTCAAATCAGATATTGA
TCAAGAAAAAAGAATTCCAGTTTTAAATAGTATGGATGCCAATGATTCTATAAATAAAAA
GGCAAGAATTAGTTGGCCAGATGGTTTTAAGTATTTTTTTGTAGATAACCAAGCTGGTGA
TTCANAATCTGCCAAATCTGGTAAAAATCTTCCAATTCAAAGAGATATCGAGTTAAATTG
GAATGGAGAAGCATATGAATATAGTAATTCAAATTACTTCCCAATTAACGGACAAGGTTT
CAATGATGTAAGCTATCCA----------CAAGTTACATGTGGTGGTTGTGAAACCTGTT
CATACGCTACCGGTAAATGTGAACCAGATAGTTCACTTTGTAATGATAACAATATTTGTA
CCATTGATATTTGTGTCCATGAAGGTATTCTCGATGGTCTACCACAAGGTAATTGTTCAA
ATACTCCAGTTGATTGTGGTGCCAATGATGAAGATAAATGTAAAACTTGGTCTTGTGATC
CAACTAAAGGTGGCTGTCAATCAACCCCAGTCGTCTGTGAAGATAAAGGTAAATGTTTAG
TTGGTACTTGTCAACCATCCACTGGTCAATGTGAATACTCTGATAGAGTTTGTGATAATG
GTGGTGCTTTCTGTGTTATTGGCCAATGTGATCAAAGACTTGGTTGTTTAGTTTTCGATA
GAGTTTGTTCATCTGATAATAGTAGATGTGAAGAAGGTGTTTGTGTAAATGGTACTGAAT
CTGAAGAAGGTCATTGTAAATCTGTTAAATATGACCCATTACCATTCAATTGTAATACTG
GTGCTGTTGTTTCAACTGCTGTTATTGCTGGTTNTACTGTCGCTGGTGCTGTTGCTCTTG
GTATTTTCCTANAANNANNNAAAAAANNNTANGCCTATTG
Length of connected seq. 1170
Full length Seq ID -
Full length Seq. -
Length of full length seq. -