VHF111
Library VH
(Link to library)
Clone ID VHF111
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHF111P
(Link to Original site)
Representative DNA sequence
>VHF111 (VHF111Q) /CSM/VH/VHF1-A/VHF111Q.Seq.d/
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGCXXXXXXXXXXATGGCCAATCTTGCTGAAGTTCNCCAA
TGTTCCAGTCGCTACCNTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAA
TGATGATTATTCATCAGGTGCATTTGCTCTCTACAGTCCATCACAATTNTCTCAATTGTT
CCCATCACTTAATAAACCATCACCAGATGGTAGATTCCATTTAGCTGGTGAAGCAACATC
TGTTCATCATGGTTGGGTCATTGGTTATCTTAANTCTGCCTATCGTTCAGTCGATCACAT
TCTTCAAGTTGAAGGTCTTGATGAGTTACGTGCCAAATTACGTCTCAATTGGGGTTTCAT
CGATGAAGTTGAAGATCNTCAAGATGATCAACAATATGTTGACCCACATCACAATTTAAG
TGGTCCAAATGATAAAAAATTCAGATCAAATGTATCACAAGTTGCCATTCAACCAAGATT
CAAAGCTCCAAGAAACTTTAAACCAAGAAATACTGCTGCTAGTATTGGGGTCTTAAATAA
ATCAAAACCAANTGTCATTTA
sequence update 2002.10.25
Translated Amino Acid sequence
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
YGCKMVS---

---WPILLKFXNVPVATXQQLFVDYKCWDWYNDDYSSGAFALYSPSQXSQLFPSLNKPSP
DGRFHLAGEATSVHHGWVIGYLXSAYRSVDHILQVEGLDELRAKLRLNWGFIDEVEDXQD
DQQYVDPHHNLSGPNDKKFRSNVSQVAIQPRFKAPRNFKPRNTAASIGVLNKSKPXVI


Translated Amino Acid sequence (All Frames)
Frame A:
ilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvm
llecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvly
*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvy
nmvvkw*---

---manlaevxqcssryxptiic*lqmlglv***lfircicslqsitixsivpit**tit
rw*ipfsw*snicsswlghwls*xclsfsrshsss*rs**vtcqitsqlgfhr*s*rssr
*stic*ptsqfkwsk**kiqikcitschstkiqsskkl*tkkycc*ywglk*iktxchl

Frame B:
fyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfi
rtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmft
iwl*ngk---

---WPILLKFXNVPVATXQQLFVDYKCWDWYNDDYSSGAFALYSPSQXSQLFPSLNKPSP
DGRFHLAGEATSVHHGWVIGYLXSAYRSVDHILQVEGLDELRAKLRLNWGFIDEVEDXQD
DQQYVDPHHNLSGPNDKKFRSNVSQVAIQPRFKAPRNFKPRNTAASIGVLNKSKPXVI

Frame C:
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
YGCKMVS---

---gqsc*sspmfqslpsnnyllitnvgigimmiihqvhllstvhhnxlncshhlinhhq
mvdsi*lvkqhlfimvgslvilxlpivqsitffklkvlmsyvpnyvsigvssmklkixkm
innmlthiti*vvqmiknsdqmyhklpfnqdsklqetlnqeilllvlgs*inqnqxsf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1116 0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 1116 0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 1116 0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 1116 0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 1116 0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/ 1116 0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/ 1116 0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/ 1116 0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/ 1116 0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/ 1116 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces. 40 0.096 4
AY190287|AY190287.1 Campylobacter jejuni plasmid pCjA13 VirB11-like protein gene, complete cds. 40 0.18 2
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275. 38 0.45 2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003. 38 0.45 2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277. 38 0.45 2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273. 38 0.45 2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274. 38 0.45 2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276. 38 0.45 2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272. 38 0.45 2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence. 48 0.57 1
dna update 2007. 9. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 204 6e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 109 1e-22
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 80 2e-13
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 78 6e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 77 1e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 76 2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 76 2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 76 2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 76 2e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 76 2e-12
protein update 2009. 7. 2
PSORT

psg: 0.67 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHF111 is cyt

5' end seq. ID VHF111F
5' end seq.
>VHF111F.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGCNNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID VHF111Z
3' end seq.
>VHF111Z.Seq
NNNNNNNNNNATGGCCAATCTTGCTGAAGTTCNCCAATGTTCCAGTCGCTACCNTCCAAC
AATTATTTGTTGATTACAAATGTTGGGATTGGTATAATGATGATTATTCATCAGGTGCAT
TTGCTCTCTACAGTCCATCACAATTNTCTCAATTGTTCCCATCACTTAATAAACCATCAC
CAGATGGTAGATTCCATTTAGCTGGTGAAGCAACATCTGTTCATCATGGTTGGGTCATTG
GTTATCTTAANTCTGCCTATCGTTCAGTCGATCACATTCTTCAAGTTGAAGGTCTTGATG
AGTTACGTGCCAAATTACGTCTCAATTGGGGTTTCATCGATGAAGTTGAAGATCNTCAAG
ATGATCAACAATATGTTGACCCACATCACAATTTAAGTGGTCCAAATGATAAAAAATTCA
GATCAAATGTATCACAAGTTGCCATTCAACCAAGATTCAAAGCTCCAAGAAACTTTAAAC
CAAGAAATACTGCTGCTAGTATTGGGGTCTTAAATAAATCAAAACCAANTGTCATTTA
Length of 3' end seq. 538
Connected seq. ID VHF111P
Connected seq.
>VHF111P.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGC----------ATGGCCAATCTTGCTGAAGTTCNCCAA
TGTTCCAGTCGCTACCNTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAA
TGATGATTATTCATCAGGTGCATTTGCTCTCTACAGTCCATCACAATTNTCTCAATTGTT
CCCATCACTTAATAAACCATCACCAGATGGTAGATTCCATTTAGCTGGTGAAGCAACATC
TGTTCATCATGGTTGGGTCATTGGTTATCTTAANTCTGCCTATCGTTCAGTCGATCACAT
TCTTCAAGTTGAAGGTCTTGATGAGTTACGTGCCAAATTACGTCTCAATTGGGGTTTCAT
CGATGAAGTTGAAGATCNTCAAGATGATCAACAATATGTTGACCCACATCACAATTTAAG
TGGTCCAAATGATAAAAAATTCAGATCAAATGTATCACAAGTTGCCATTCAACCAAGATT
CAAAGCTCCAAGAAACTTTAAACCAAGAAATACTGCTGCTAGTATTGGGGTCTTAAATAA
ATCAAAACCAANTGTCATTTA
Length of connected seq. 1091
Full length Seq ID -
Full length Seq. -
Length of full length seq. -