NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF111
Library VH
(Link to library)
Clone ID VHF111
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHF111P
(Link to Original site)
Representative DNA sequence 
>VHF111 (VHF111Q) /CSM/VH/VHF1-A/VHF111Q.Seq.d/
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGCXXXXXXXXXXATGGCCAATCTTGCTGAAGTTCNCCAA
TGTTCCAGTCGCTACCNTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAA
TGATGATTATTCATCAGGTGCATTTGCTCTCTACAGTCCATCACAATTNTCTCAATTGTT
CCCATCACTTAATAAACCATCACCAGATGGTAGATTCCATTTAGCTGGTGAAGCAACATC
TGTTCATCATGGTTGGGTCATTGGTTATCTTAANTCTGCCTATCGTTCAGTCGATCACAT
TCTTCAAGTTGAAGGTCTTGATGAGTTACGTGCCAAATTACGTCTCAATTGGGGTTTCAT
CGATGAAGTTGAAGATCNTCAAGATGATCAACAATATGTTGACCCACATCACAATTTAAG
TGGTCCAAATGATAAAAAATTCAGATCAAATGTATCACAAGTTGCCATTCAACCAAGATT
CAAAGCTCCAAGAAACTTTAAACCAAGAAATACTGCTGCTAGTATTGGGGTCTTAAATAA
ATCAAAACCAANTGTCATTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
YGCKMVS---

---WPILLKFXNVPVATXQQLFVDYKCWDWYNDDYSSGAFALYSPSQXSQLFPSLNKPSP
DGRFHLAGEATSVHHGWVIGYLXSAYRSVDHILQVEGLDELRAKLRLNWGFIDEVEDXQD
DQQYVDPHHNLSGPNDKKFRSNVSQVAIQPRFKAPRNFKPRNTAASIGVLNKSKPXVI
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvm
llecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvly
*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvy
nmvvkw*---

---manlaevxqcssryxptiic*lqmlglv***lfircicslqsitixsivpit**tit
rw*ipfsw*snicsswlghwls*xclsfsrshsss*rs**vtcqitsqlgfhr*s*rssr
*stic*ptsqfkwsk**kiqikcitschstkiqsskkl*tkkycc*ywglk*iktxchl

Frame B:
fyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfi
rtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmft
iwl*ngk---

---WPILLKFXNVPVATXQQLFVDYKCWDWYNDDYSSGAFALYSPSQXSQLFPSLNKPSP
DGRFHLAGEATSVHHGWVIGYLXSAYRSVDHILQVEGLDELRAKLRLNWGFIDEVEDXQD
DQQYVDPHHNLSGPNDKKFRSNVSQVAIQPRFKAPRNFKPRNTAASIGVLNKSKPXVI

Frame C:
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
YGCKMVS---

---gqsc*sspmfqslpsnnyllitnvgigimmiihqvhllstvhhnxlncshhlinhhq
mvdsi*lvkqhlfimvgslvilxlpivqsitffklkvlmsyvpnyvsigvssmklkixkm
innmlthiti*vvqmiknsdqmyhklpfnqdsklqetlnqeilllvlgs*inqnqxsf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1116   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1116   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1116   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1116   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1116   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1116   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                       1116   0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/                       1116   0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/                       1116   0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/                       1116   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces.    40   0.096  4
AY190287|AY190287.1 Campylobacter jejuni plasmid pCjA13 VirB11-like protein gene, complete cds.    40   0.18   2
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275.          38   0.45   2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003.          38   0.45   2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277.          38   0.45   2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273.          38   0.45   2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274.          38   0.45   2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276.          38   0.45   2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272.          38   0.45   2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence.    48   0.57   1
dna update 2007. 9. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   204   6e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   109   1e-22
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    80   2e-13
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    78   6e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    77   1e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    76   2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    76   2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    76   2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    76   2e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    76   2e-12
protein update 2009. 7. 2
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHF111 is cyt
5' end seq. ID VHF111F
5' end seq. 
>VHF111F.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGCNNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID VHF111Z
3' end seq. 
>VHF111Z.Seq
NNNNNNNNNNATGGCCAATCTTGCTGAAGTTCNCCAATGTTCCAGTCGCTACCNTCCAAC
AATTATTTGTTGATTACAAATGTTGGGATTGGTATAATGATGATTATTCATCAGGTGCAT
TTGCTCTCTACAGTCCATCACAATTNTCTCAATTGTTCCCATCACTTAATAAACCATCAC
CAGATGGTAGATTCCATTTAGCTGGTGAAGCAACATCTGTTCATCATGGTTGGGTCATTG
GTTATCTTAANTCTGCCTATCGTTCAGTCGATCACATTCTTCAAGTTGAAGGTCTTGATG
AGTTACGTGCCAAATTACGTCTCAATTGGGGTTTCATCGATGAAGTTGAAGATCNTCAAG
ATGATCAACAATATGTTGACCCACATCACAATTTAAGTGGTCCAAATGATAAAAAATTCA
GATCAAATGTATCACAAGTTGCCATTCAACCAAGATTCAAAGCTCCAAGAAACTTTAAAC
CAAGAAATACTGCTGCTAGTATTGGGGTCTTAAATAAATCAAAACCAANTGTCATTTA
Length of 3' end seq. 538
Connected seq. ID VHF111P
Connected seq. 
>VHF111P.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGC----------ATGGCCAATCTTGCTGAAGTTCNCCAA
TGTTCCAGTCGCTACCNTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGTATAA
TGATGATTATTCATCAGGTGCATTTGCTCTCTACAGTCCATCACAATTNTCTCAATTGTT
CCCATCACTTAATAAACCATCACCAGATGGTAGATTCCATTTAGCTGGTGAAGCAACATC
TGTTCATCATGGTTGGGTCATTGGTTATCTTAANTCTGCCTATCGTTCAGTCGATCACAT
TCTTCAAGTTGAAGGTCTTGATGAGTTACGTGCCAAATTACGTCTCAATTGGGGTTTCAT
CGATGAAGTTGAAGATCNTCAAGATGATCAACAATATGTTGACCCACATCACAATTTAAG
TGGTCCAAATGATAAAAAATTCAGATCAAATGTATCACAAGTTGCCATTCAACCAAGATT
CAAAGCTCCAAGAAACTTTAAACCAAGAAATACTGCTGCTAGTATTGGGGTCTTAAATAA
ATCAAAACCAANTGTCATTTA
Length of connected seq. 1091
Full length Seq ID -
Full length Seq. -
Length of full length seq. -