VHF310
Library VH
(Link to library)
Clone ID VHF310
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF310 (VHF310Q) /CSM/VH/VHF3-A/VHF310Q.Seq.d/
XXXXXXXXXXTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCT
TTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGA
GGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGT
GGTCAAATCATCCCAACTGCTCGTCGTGTANTCTATGCTGATGAATTAACTGCCTCCCCA
ANTATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGT
ATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGT
TCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGAT
GATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCT
TCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAG
AGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACA
ATTTAAGTCGCACTTGAGTTTTCAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---VNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGG
QIIPTARRVXYADELTASPXILEPIYLVEITAPENAIGGIXSVLNRRRGIVIGEERRIGS
PLLSVKAHLPVLESFGFTDDLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKR
KGLAPEIPDLDKFHEKL*ti*valefs


Translated Amino Acid sequence (All Frames)
Frame A:
---rqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*chpph*chpqrww
snhpncsscxlc**inclpxylrtnllsrnycprkrywwylxctqss*rycyw*rtsyrf
piiicqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*srfshqke
krfsprnprs*qiprktlnnlsrt*vf


Frame B:
---VNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGG
QIIPTARRVXYADELTASPXILEPIYLVEITAPENAIGGIXSVLNRRRGIVIGEERRIGS
PLLSVKAHLPVLESFGFTDDLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKR
KGLAPEIPDLDKFHEKL*ti*valefs


Frame C:
---smspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmmspstlmpstevvv
kssqllvvxsmlmn*lppqxs*nqst**kllpqktllvvfxlysivvevlllvknvvsvp
hyylskliyqy*npsvspmiyvptlpvklshnvssiiglqlvlstkirkplksl*ppere
kv*pqksqiltnstknskqfkshlsfq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF310 (VHF310Q) /CSM/VH/VHF3-A/VHF310Q.Seq.d/ 1201 0.0
VHE779 (VHE779Q) /CSM/VH/VHE7-D/VHE779Q.Seq.d/ 1193 0.0
VHF803 (VHF803Q) /CSM/VH/VHF8-A/VHF803Q.Seq.d/ 1189 0.0
VHF757 (VHF757Q) /CSM/VH/VHF7-C/VHF757Q.Seq.d/ 1183 0.0
VHF604 (VHF604Q) /CSM/VH/VHF6-A/VHF604Q.Seq.d/ 1183 0.0
VHF160 (VHF160Q) /CSM/VH/VHF1-C/VHF160Q.Seq.d/ 1183 0.0
VHF635 (VHF635Q) /CSM/VH/VHF6-B/VHF635Q.Seq.d/ 1181 0.0
VHF538 (VHF538Q) /CSM/VH/VHF5-B/VHF538Q.Seq.d/ 1181 0.0
VHF112 (VHF112Q) /CSM/VH/VHF1-A/VHF112Q.Seq.d/ 1181 0.0
VHE713 (VHE713Q) /CSM/VH/VHE7-A/VHE713Q.Seq.d/ 1181 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ439614) Dictyostelium discoideum cDNA clone:ddv41d03, 3' ... 1201 0.0 1
(BJ439582) Dictyostelium discoideum cDNA clone:ddv40n19, 3' ... 1193 0.0 1
(BJ439917) Dictyostelium discoideum cDNA clone:ddv42f02, 3' ... 1189 0.0 1
(BJ440053) Dictyostelium discoideum cDNA clone:ddv42b15, 3' ... 1183 0.0 1
(BJ439921) Dictyostelium discoideum cDNA clone:ddv42g02, 3' ... 1183 0.0 1
(BJ439779) Dictyostelium discoideum cDNA clone:ddv41g15, 3' ... 1183 0.0 1
(BJ440019) Dictyostelium discoideum cDNA clone:ddv42k09, 3' ... 1181 0.0 1
(BJ439993) Dictyostelium discoideum cDNA clone:ddv42e10, 3' ... 1181 0.0 1
(BJ439628) Dictyostelium discoideum cDNA clone:ddv41g03, 3' ... 1181 0.0 1
(BJ439334) Dictyostelium discoideum cDNA clone:ddv40j03, 3' ... 1181 0.0 1
dna update 2008.10.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 243 2e-63
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ... 242 6e-63
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 241 2e-62
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 240 2e-62
AF544973_1(AF544973|pid:none) Ctenopharyngodon idella elongation... 240 3e-62
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 240 3e-62
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 238 1e-61
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 238 1e-61
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 238 1e-61
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 238 1e-61
protein update 2009. 7. 2
PSORT

psg: 0.67 gvh: 0.42 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VHF310 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF310Z
3' end seq.
>VHF310Z.Seq
NNNNNNNNNNTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCT
TTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGA
GGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGT
GGTCAAATCATCCCAACTGCTCGTCGTGTANTCTATGCTGATGAATTAACTGCCTCCCCA
ANTATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGT
ATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGT
TCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGAT
GATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCT
TCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAG
AGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACA
ATTTAAGTCGCACTTGAGTTTTCAA
Length of 3' end seq. 625
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -