VHF312
Library VH
(Link to library)
Clone ID VHF312
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID VHF312P
(Link to Original site)
Representative DNA sequence
>VHF312 (VHF312Q) /CSM/VH/VHF3-A/VHF312Q.Seq.d/
ATTTCATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAACTAT
TAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACATATGG
AAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAACCACG
TACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGAAACA
ATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATTTAAT
GTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAACATT
AACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAACTTA
TTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTCATCA
TATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTGTTAXXXXXXX
XXXTACAGTTGTGCTGCAGTTTTAAGGGCTTATNTCCCAGGTAGTGAAGGTGGTAAACCA
ATCGCCAACATTTTCATGGGTAATGTAAATCCATCTGGTCGTNTTCCTTTAACTTATCCA
GGTANTACTGGTGATATCGGTGTTCCATATTACCNCAAATACAGTGAAAATGGTGTCNCC
ACTCCAATTTTCCAATTTGGTGATGGTNTTTNTTATACCNCTTTTAACTATACCAATTTC
GCCTGTAGCAATTGTAAACCAATNTNTGGTCAATNTGGTAANTACACTGGTGTTTTAGGT
CAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAAAGANTCT
GTTNTNTTANATNTNTCTGATCTTTGGGCTCAAGTTANTCCAGAAGTTAAAATGTTAANA
GGTTTCCAAAAAGTTGATNTTATGCCAGNTAAATNTCAACAAATNTNTTTTACCCT
sequence update 2002.10.25
Translated Amino Acid sequence
FHEYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTYGSSIRVSIVGGEEAEVIEKPR
TFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNLMSKMSITEKIGQMTQLDITTL
TSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMINTIQTIV---

---YSCAAVLRAYXPGSEGGKPIANIFMGNVNPSGRXPLTYPGXTGDIGVPYYXKYSENG
VXTPIFQFGDGXXYTXFNYTNFACSNCKPXXGQXGXYTGVLGQSYTFTVTVTNNGNVQGK
XSVXLXXSDLWAQVXPEVKMLXGFQKVDXMPXKXQQXXFT


Translated Amino Acid sequence (All Frames)
Frame A:
is*ifn*iqfyiyi*kdeny*kfiftvivdsefinkfniwkfn*skhcwr*rs*sh*ktt
yfwk*krtqirv*snlsketiksrky*fhvcqryfc**fnvknvnh*knwsndsigyyni
nitkynyn**nnisilc*nllywiifkftsirwfsr*yssy***clvryd*yysnhc---

---YSCAAVLRAYXPGSEGGKPIANIFMGNVNPSGRXPLTYPGXTGDIGVPYYXKYSENG
VXTPIFQFGDGXXYTXFNYTNFACSNCKPXXGQXGXYTGVLGQSYTFTVTVTNNGNVQGK
XSVXLXXSDLWAQVXPEVKMLXGFQKVDXMPXKXQQXXFT

Frame B:
FHEYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTYGSSIRVSIVGGEEAEVIEKPR
TFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNLMSKMSITEKIGQMTQLDITTL
TSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMINTIQTIV---

---tvvlqf*glxsqvvkvvnqsptfswvm*ihlvvfl*liqvxlvisvfhitxntvkmv
splqfsnlvmvfxiplltipispvaivnqxxvnxvxtlvf*vnpilslslsqtmvtfkvk
xlxxxxxlifglklxqklkc*xvskklxlcqxnxnkxxlp

Frame C:
fmni*lnsilyiyikr*kllkvyfychc***iy**vqhmevqle*allevkklkslknhv
lleikensn*sivkfiqrnn*ikkilisclpeilllii*cqkcqslkklvk*lnwilqh*
hhqiqlqlmkqh*himlkliildhi*ihqyqvv*qvifiilivvfg*i*lilfkpll---

---qlccsfkglxpr**rw*tnrqhfhg*cksiwsxsfnlsrxyw*yrcsilpqiq*kwc
xhsnfpiw*wxxlyxf*lyqfrl*ql*tnxwsxw*xhwcfrsilyfhchchkqw*rsr*r
xcxxxxx*slgssxsrs*nvxrfpks*xyax*xstnxfyp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ110 (VHQ110Q) /CSM/VH/VHQ1-A/VHQ110Q.Seq.d/ 969 0.0
VHP223 (VHP223Q) /CSM/VH/VHP2-A/VHP223Q.Seq.d/ 969 0.0
VHO543 (VHO543Q) /CSM/VH/VHO5-B/VHO543Q.Seq.d/ 969 0.0
VHO490 (VHO490Q) /CSM/VH/VHO4-D/VHO490Q.Seq.d/ 969 0.0
VHO350 (VHO350Q) /CSM/VH/VHO3-C/VHO350Q.Seq.d/ 969 0.0
VHN195 (VHN195Q) /CSM/VH/VHN1-D/VHN195Q.Seq.d/ 969 0.0
VHN170 (VHN170Q) /CSM/VH/VHN1-C/VHN170Q.Seq.d/ 969 0.0
VHM863 (VHM863Q) /CSM/VH/VHM8-C/VHM863Q.Seq.d/ 969 0.0
VHM744 (VHM744Q) /CSM/VH/VHM7-B/VHM744Q.Seq.d/ 969 0.0
VHL794 (VHL794Q) /CSM/VH/VHL7-D/VHL794Q.Seq.d/ 969 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(L21014) Dictyostelium discoideum beta-glucosidase mRNA, com... 969 0.0 4
(BJ422765) Dictyostelium discoideum cDNA clone:ddv47a02, 5' ... 969 0.0 2
(BJ422996) Dictyostelium discoideum cDNA clone:ddv47p18, 5' ... 969 0.0 2
(BJ422518) Dictyostelium discoideum cDNA clone:ddv46n04, 5' ... 969 0.0 2
(BJ423948) Dictyostelium discoideum cDNA clone:ddv50m22, 5' ... 969 0.0 2
(BJ420729) Dictyostelium discoideum cDNA clone:ddv40a11, 5' ... 969 0.0 2
(BJ421220) Dictyostelium discoideum cDNA clone:ddv41h03, 5' ... 969 0.0 2
(BJ425316) Dictyostelium discoideum cDNA clone:ddv55h09, 5' ... 961 0.0 2
(BJ421201) Dictyostelium discoideum cDNA clone:ddv41d05, 5' ... 961 0.0 2
(BJ423968) Dictyostelium discoideum cDNA clone:ddv51a02, 5' ... 969 0.0 2
dna update 2008.10.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma... 278 2e-73
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 80 9e-14
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 76 2e-12
CP001146_680(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 72 2e-11
CP001251_792(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 72 4e-11
CP001400_2160(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 69 3e-10
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 69 3e-10
CP000804_895(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 68 4e-10
CP000685_3497(CP000685|pid:none) Flavobacterium johnsoniae UW101... 67 8e-10
Z56279_3(Z56279|pid:none) T.brockii cglF, cglG, xglS and cglT ge... 67 1e-09
protein update 2009. 7. 2
PSORT

psg: 0.74 gvh: 0.73 alm: 0.26 top: 0.07 tms: 0.07 mit: 0.34 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.79 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
20.0 %: endoplasmic reticulum
16.0 %: Golgi
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for VHF312 is cyt

5' end seq. ID VHF312F
5' end seq.
>VHF312F.Seq
ATTTCATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAACTAT
TAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACATATGG
AAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAACCACG
TACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGAAACA
ATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATTTAAT
GTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAACATT
AACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAACTTA
TTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTCATCA
TATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTGTTANNNNNNN
NNN
Length of 5' end seq. 543
3' end seq. ID VHF312Z
3' end seq.
>VHF312Z.Seq
NNNNNNNNNNTACAGTTGTGCTGCAGTTTTAAGGGCTTATNTCCCAGGTAGTGAAGGTGG
TAAACCAATCGCCAACATTTTCATGGGTAATGTAAATCCATCTGGTCGTNTTCCTTTAAC
TTATCCAGGTANTACTGGTGATATCGGTGTTCCATATTACCNCAAATACAGTGAAAATGG
TGTCNCCACTCCAATTTTCCAATTTGGTGATGGTNTTTNTTATACCNCTTTTAACTATAC
CAATTTCGCCTGTAGCAATTGTAAACCAATNTNTGGTCAATNTGGTAANTACACTGGTGT
TTTAGGTCAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAA
AGANTCTGTTNTNTTANATNTNTCTGATCTTTGGGCTCAAGTTANTCCAGAAGTTAAAAT
GTTAANAGGTTTCCAAAAAGTTGATNTTATGCCAGNTAAATNTCAACAAATNTNTTTTAC
CCT
Length of 3' end seq. 483
Connected seq. ID VHF312P
Connected seq.
>VHF312P.Seq
ATTTCATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAACTAT
TAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACATATGG
AAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAACCACG
TACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGAAACA
ATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATTTAAT
GTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAACATT
AACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAACTTA
TTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTCATCA
TATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTGTTA-------
---TACAGTTGTGCTGCAGTTTTAAGGGCTTATNTCCCAGGTAGTGAAGGTGGTAAACCA
ATCGCCAACATTTTCATGGGTAATGTAAATCCATCTGGTCGTNTTCCTTTAACTTATCCA
GGTANTACTGGTGATATCGGTGTTCCATATTACCNCAAATACAGTGAAAATGGTGTCNCC
ACTCCAATTTTCCAATTTGGTGATGGTNTTTNTTATACCNCTTTTAACTATACCAATTTC
GCCTGTAGCAATTGTAAACCAATNTNTGGTCAATNTGGTAANTACACTGGTGTTTTAGGT
CAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAAAGANTCT
GTTNTNTTANATNTNTCTGATCTTTGGGCTCAAGTTANTCCAGAAGTTAAAATGTTAANA
GGTTTCCAAAAAGTTGATNTTATGCCAGNTAAATNTCAACAAATNTNTTTTACCCT
Length of connected seq. 1006
Full length Seq ID -
Full length Seq. -
Length of full length seq. -