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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF340
Library VH
(Link to library)
Clone ID VHF340
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11939-1
Original site URL
Representative seq. ID VHF340P
(Link to Original site)
Representative DNA sequence 
>VHF340 (VHF340Q) /CSM/VH/VHF3-B/VHF340Q.Seq.d/
GGAAACAAAAGCATAAACTGTAATATTATTACGAAAAACACATATTTTTTTTATTTTTTT
AAAATTTATTAAAAAAAATAATTGTGTTTTTTGAAAAAAAAAAXXXXXXXXXXAGCTGGT
GAAGCTCAACTTCAATGTACTTCAGANTNTGAAGCTTGGTGGTATGTTTTCGTTTTCTAT
AAAGTATTTTACANTCTTTTTGGTGTATTTTTAGCTTTTAAAACAAGAAATGTTGTTGAT
TCTTTAAATGAATCAAAACCAATTACTTTAGCTTTATATAATTTAACATTTGTTATGGTT
GTTGCAATTGCACTTGGTTTTATCTTAAGAGATAATCCAATTGCAATTATTGTAATTCAA
ACAATTGCAATTTTACTTGGATTTACAGTTACAGTATCAGTACTTTTCTTACCAAAGGTT
TGGATGATTTTATCTGGTCAACAACATTCAATGGATTCAATTGGTACNTCAATGGATTCA
ATGGGAAGATCAAATGGTAATACCACAGAAGCAGAGTCAANTAGAGGTTACACAAATAAA
GATTACAATAATCAATCAGTTGGTAGATCATTNTCTGNTCATGCCACTGGTTTCAAAGAT
GTCGCTCCA
sequence update 2002.10.25
Translated Amino Acid sequence 
kqkhkl*yyyekhifflff*NLLKKIIVFFEKK---

---AGEAQLQCTSXXEAWWYVFVFYKVFYXLFGVFLAFKTRNVVDSLNESKPITLALYNL
TFVMVVAIALGFILRDNPIAIIVIQTIAILLGFTVTVSVLFLPKVWMILSGQQHSMDSIG
TSMDSMGRSNGNTTEAESXRGYTNKDYNNQSVGRSXSXHATGFKDVAP
Translated Amino Acid sequence (All Frames) 
Frame A:
gnksincniitkntyffyffkiy*kk*lcflkkk---

---sw*sstsmyfrx*slvvcfrfl*silxsfwcifsf*nkkcc*ffk*iktnyfsfi*f
nicygccnctwfylkr*sncnycnsnncnftwiysysistfltkglddfiwsttfngfnw
yxngfngkikw*yhrsrvx*rlhk*rlq*sisw*iixxschwfqrcrs

Frame B:
etka*tvillrkthiffiflkfikknncvf*kkk---

---AGEAQLQCTSXXEAWWYVFVFYKVFYXLFGVFLAFKTRNVVDSLNESKPITLALYNL
TFVMVVAIALGFILRDNPIAIIVIQTIAILLGFTVTVSVLFLPKVWMILSGQQHSMDSIG
TSMDSMGRSNGNTTEAESXRGYTNKDYNNQSVGRSXSXHATGFKDVAP

Frame C:
kqkhkl*yyyekhifflff*NLLKKIIVFFEKK---

---lvklnfnvlqxxklggmfsfsikyftxflvyf*llkqemllil*mnqnqll*lyii*
hllwllqlhlvls*eiiqlqll*fkqlqfyldlqlqyqyfsyqrfg*fylvnniqwiqlv
xqwiqwedqmvipqkqsqxevtqikitiinqlvdhxlxmplvskmsl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF340 (VHF340Q) /CSM/VH/VHF3-B/VHF340Q.Seq.d/                        942   0.0
VHN212 (VHN212Q) /CSM/VH/VHN2-A/VHN212Q.Seq.d/                        934   0.0
VHL723 (VHL723Q) /CSM/VH/VHL7-A/VHL723Q.Seq.d/                        934   0.0
VHK392 (VHK392Q) /CSM/VH/VHK3-D/VHK392Q.Seq.d/                        934   0.0
VHI869 (VHI869Q) /CSM/VH/VHI8-C/VHI869Q.Seq.d/                        934   0.0
VHD688 (VHD688Q) /CSM/VH/VHD6-D/VHD688Q.Seq.d/                        934   0.0
VHB864 (VHB864Q) /CSM/VH/VHB8-C/VHB864Q.Seq.d/                        934   0.0
VHB603 (VHB603Q) /CSM/VH/VHB6-A/VHB603Q.Seq.d/                        934   0.0
CHR346 (CHR346Q) /CSM/CH/CHR3-B/CHR346Q.Seq.d/                        934   0.0
VHD520 (VHD520Q) /CSM/VH/VHD5-A/VHD520Q.Seq.d/                        928   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439747) Dictyostelium discoideum cDNA clone:ddv41p09, 3' ...   749   0.0    2
(BJ437586) Dictyostelium discoideum cDNA clone:ddv34p16, 3' ...   741   0.0    2
(BJ444659) Dictyostelium discoideum cDNA clone:ddv57g04, 3' ...   741   0.0    2
(BJ438942) Dictyostelium discoideum cDNA clone:ddv38o22, 3' ...   741   0.0    2
(BJ442031) Dictyostelium discoideum cDNA clone:ddv48j18, 3' ...   741   0.0    2
(BJ443808) Dictyostelium discoideum cDNA clone:ddv54n05, 3' ...   741   0.0    2
(BJ385867) Dictyostelium discoideum cDNA clone:ddc56l11, 3' ...   741   0.0    2
(BJ443081) Dictyostelium discoideum cDNA clone:ddv51h23, 3' ...   741   0.0    2
(BJ437367) Dictyostelium discoideum cDNA clone:ddv34e02, 3' ...   741   0.0    2
(BJ438653) Dictyostelium discoideum cDNA clone:ddv38g05, 3' ...   741   0.0    2
dna update 2008.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ET0) RecName: Full=Metabotropic glutamate receptor-like prot...   256   5e-67
BC094173_1(BC094173|pid:none) Xenopus laevis hypothetical protei...    48   2e-04
AF099033_1(AF099033|pid:none) Homo sapiens gamma-aminobutyric ac...    48   2e-04
AF074482_1(AF074482|pid:none) Rattus norvegicus GABA-B receptor ...    48   2e-04
DQ891731_1(DQ891731|pid:none) Synthetic construct clone IMAGE:10...    48   2e-04
BC154060_1(BC154060|pid:none) Xenopus tropicalis gamma-aminobuty...    48   2e-04
AB172729_1(AB172729|pid:none) Macaca fascicularis brain cDNA clo...    48   2e-04
BC035071_1(BC035071|pid:none) Homo sapiens gamma-aminobutyric ac...    48   2e-04
AF069755_1(AF069755|pid:none) Homo sapiens orphan G protein-coup...    48   2e-04
(O88871) RecName: Full=Gamma-aminobutyric acid type B receptor s...    48   2e-04
protein update 2009. 7. 2
PSORT 

 psg: 0.52  gvh: 0.40  alm: 0.20  top: 0.60  tms: 0.20  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VHF340 is end
5' end seq. ID VHF340F
5' end seq. 
>VHF340F.Seq
GGAAACAAAAGCATAAACTGTAATATTATTACGAAAAACACATATTTTTTTTATTTTTTT
AAAATTTATTAAAAAAAATAATTGTGTTTTTTGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 113
3' end seq. ID VHF340Z
3' end seq. 
>VHF340Z.Seq
NNNNNNNNNNAGCTGGTGAAGCTCAACTTCAATGTACTTCAGANTNTGAAGCTTGGTGGT
ATGTTTTCGTTTTCTATAAAGTATTTTACANTCTTTTTGGTGTATTTTTAGCTTTTAAAA
CAAGAAATGTTGTTGATTCTTTAAATGAATCAAAACCAATTACTTTAGCTTTATATAATT
TAACATTTGTTATGGTTGTTGCAATTGCACTTGGTTTTATCTTAAGAGATAATCCAATTG
CAATTATTGTAATTCAAACAATTGCAATTTTACTTGGATTTACAGTTACAGTATCAGTAC
TTTTCTTACCAAAGGTTTGGATGATTTTATCTGGTCAACAACATTCAATGGATTCAATTG
GTACNTCAATGGATTCAATGGGAAGATCAAATGGTAATACCACAGAAGCAGAGTCAANTA
GAGGTTACACAAATAAAGATTACAATAATCAATCAGTTGGTAGATCATTNTCTGNTCATG
CCACTGGTTTCAAAGATGTCGCTCCA
Length of 3' end seq. 506
Connected seq. ID VHF340P
Connected seq. 
>VHF340P.Seq
GGAAACAAAAGCATAAACTGTAATATTATTACGAAAAACACATATTTTTTTTATTTTTTT
AAAATTTATTAAAAAAAATAATTGTGTTTTTTGAAAAAAAAAA----------AGCTGGT
GAAGCTCAACTTCAATGTACTTCAGANTNTGAAGCTTGGTGGTATGTTTTCGTTTTCTAT
AAAGTATTTTACANTCTTTTTGGTGTATTTTTAGCTTTTAAAACAAGAAATGTTGTTGAT
TCTTTAAATGAATCAAAACCAATTACTTTAGCTTTATATAATTTAACATTTGTTATGGTT
GTTGCAATTGCACTTGGTTTTATCTTAAGAGATAATCCAATTGCAATTATTGTAATTCAA
ACAATTGCAATTTTACTTGGATTTACAGTTACAGTATCAGTACTTTTCTTACCAAAGGTT
TGGATGATTTTATCTGGTCAACAACATTCAATGGATTCAATTGGTACNTCAATGGATTCA
ATGGGAAGATCAAATGGTAATACCACAGAAGCAGAGTCAANTAGAGGTTACACAAATAAA
GATTACAATAATCAATCAGTTGGTAGATCATTNTCTGNTCATGCCACTGGTTTCAAAGAT
GTCGCTCCA
Length of connected seq. 599
Full length Seq ID -
Full length Seq. -
Length of full length seq. -