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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF575
Library VH
(Link to library)
Clone ID VHF575
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15481-1|Contig-U15981-1
Original site URL
Representative seq. ID VHF575P
(Link to Original site)
Representative DNA sequence 
>VHF575 (VHF575Q) /CSM/VH/VHF5-D/VHF575Q.Seq.d/
ATAATAATACAAAGAAGAAATGAAAAATATAAATAATAAAATTTTAAAGATTTTTATTCT
TTTTTTAGCAATATGCAGTGTTAAATCAGATACATGTCCAACAGATTCAAATTGGAGACC
AACACCAGCAAGTTCCAATTCACCAGTATCTCCAGCTTTGCCAACCACTTCTTTAGCCTC
TGATATTGTATATGGCGGTAATGATTTATATTACATGGCCTATTGGAGCATGACCGACCC
AAATAACCTTCAACCAGTTAGTGATGTTGAAAGTGAATTCTCTATTGCACTTCCAGCATG
GGCACCAGATTACTTTTTAATTGTTGCAAAACAATCAGCTCCAGCCCTTAAAGCCAATAC
TAATTATCAATTTTCATTTGATTTCAAATTAAGCCAAGTTTTGACTCAAGGTATTACCTA
TTCAAATATGACTCTTTCATTCTACAAACCAAGTGATATTGATTATCTTTTATGGAGTTA
TAGAGCACCAATGTATTCTTTTACTTTTACCGGTGATTTTTCATCAACTACATATAAAAG
TAAAACCATTACTTTCAGTGTTCCAGTTGATCTTGGXXXXXXXXXXTTACAAGTTTGGGC
TGCCCAAGTCGCNTATCAACAATATATCTTTTTGGCAATTCCATATCCACCAGGTACAAC
ATTCACCATTTCAACTGAAAATAAATGGGCTTGGCAAAATGCTTATGGTTTCAATTGTAN
TCTTGCTTCATCTGCTGCTGAAGTTAGAAGTAGTAATGGAACCAAATACTATTTCGATCA
AACTCATTTATTCGTTAAAATTGTTAACCCAGTTTTAACAGGTTCTCCAGCTGAATCTTT
CAATAGAGGTGGTGCTAAAATTGATGACGTTTATTGGGAATACATTTACCATATCAATGC
TACAAATCCAAATGTTTCTCCAAATCAAGAGGTTTCTATACAAATTTATCTTATACTTTA
CCTNCTTCAACTT
sequence update 2002.10.25
Translated Amino Acid sequence 
**YKEEMKNINNKILKIFILFLAICSVKSDTCPTDSNWRPTPASSNSPVSPALPTTSLAS
DIVYGGNDLYYMAYWSMTDPNNLQPVSDVESEFSIALPAWAPDYFLIVAKQSAPALKANT
NYQFSFDFKLSQVLTQGITYSNMTLSFYKPSDIDYLLWSYRAPMYSFTFTGDFSSTTYKS
KTITFSVPVDL---

---LQVWAAQVAYQQYIFLAIPYPPGTTFTISTENKWAWQNAYGFNCXLASSAAEVRSSN
GTKYYFDQTHLFVKIVNPVLTGSPAESFNRGGAKIDDVYWEYIYHINATNPNVSPNQEVS
IQIYLILYLLQL
Translated Amino Acid sequence (All Frames) 
Frame A:
iiiqrrnekyk**nfkdfysffsnmqc*irymsnrfkletntskfqftsissfanhffsl
*yciwr**filhgllehdrpk*psts**c*k*ilyctssmgtrllfnccktisssp*sqy
*lsifi*fqikpsfdsryylfkydsfilqtk*y*lsfmel*stnvffyfyr*ffinyi*k
*nhyfqcss*sw---

---LQVWAAQVAYQQYIFLAIPYPPGTTFTISTENKWAWQNAYGFNCXLASSAAEVRSSN
GTKYYFDQTHLFVKIVNPVLTGSPAESFNRGGAKIDDVYWEYIYHINATNPNVSPNQEVS
IQIYLILYLLQL

Frame B:
**YKEEMKNINNKILKIFILFLAICSVKSDTCPTDSNWRPTPASSNSPVSPALPTTSLAS
DIVYGGNDLYYMAYWSMTDPNNLQPVSDVESEFSIALPAWAPDYFLIVAKQSAPALKANT
NYQFSFDFKLSQVLTQGITYSNMTLSFYKPSDIDYLLWSYRAPMYSFTFTGDFSSTTYKS
KTITFSVPVDL---

---ykfglpksxinnisfwqfhihqvqhspfqlkinglgkmlmvsivxllhlllklevvm
epntisikliyslklltqf*qvlqlnlsievvlklmtfigntftismlqiqmflqikrfl
ykfilyftxfn

Frame C:
nntkkk*ki*iikf*rflfff*qyavlnqihvqqiqigdqhqqvpihqylqlcqpll*pl
ilymavmiyitwpiga*ptqitfnqlvmlkvnsllhfqhghqitf*llqnnqlqplkpil
iinfhlisn*akf*lkvlpiqi*lfhstnqviliifygviehqcillllpvifhqlhikv
kpllsvfqlil---

---tslgcpsrxstiylfgnsistrynihhfn*k*mglakclwfqlxscficc*s*k**w
nqilfrsnsfir*nc*psfnrfss*ifq*rwc*n**rllgihlpyqcykskcfsksrgfy
tnlsytlpxst
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF575 (VHF575Q) /CSM/VH/VHF5-D/VHF575Q.Seq.d/                       1721   0.0
VHM368 (VHM368Q) /CSM/VH/VHM3-C/VHM368Q.Seq.d/                        995   0.0
VHM312 (VHM312Q) /CSM/VH/VHM3-A/VHM312Q.Seq.d/                        995   0.0
VHK676 (VHK676Q) /CSM/VH/VHK6-D/VHK676Q.Seq.d/                        995   0.0
VHH761 (VHH761Q) /CSM/VH/VHH7-C/VHH761Q.Seq.d/                        995   0.0
VHG195 (VHG195Q) /CSM/VH/VHG1-D/VHG195Q.Seq.d/                        995   0.0
VHG112 (VHG112Q) /CSM/VH/VHG1-A/VHG112Q.Seq.d/                        995   0.0
VHE678 (VHE678Q) /CSM/VH/VHE6-D/VHE678Q.Seq.d/                        995   0.0
VHD747 (VHD747Q) /CSM/VH/VHD7-B/VHD747Q.Seq.d/                        995   0.0
VHJ113 (VHJ113Q) /CSM/VH/VHJ1-A/VHJ113Q.Seq.d/                        989   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421477) Dictyostelium discoideum cDNA clone:ddv42e19, 5' ...  1007   0.0    1
(BJ425399) Dictyostelium discoideum cDNA clone:ddv55h17, 5' ...   991   0.0    1
(BJ425246) Dictyostelium discoideum cDNA clone:ddv55h03, 5' ...   991   0.0    1
(BJ424551) Dictyostelium discoideum cDNA clone:ddv52g20, 5' ...   991   0.0    1
(BJ422653) Dictyostelium discoideum cDNA clone:ddv46j15, 5' ...   991   0.0    1
(BJ421814) Dictyostelium discoideum cDNA clone:ddv43m23, 5' ...   991   0.0    1
(BJ421556) Dictyostelium discoideum cDNA clone:ddv43g03, 5' ...   991   0.0    1
(BJ420928) Dictyostelium discoideum cDNA clone:ddv40k20, 5' ...   991   0.0    1
(BJ420164) Dictyostelium discoideum cDNA clone:ddv38n11, 5' ...   991   0.0    1
(BJ423409) Dictyostelium discoideum cDNA clone:ddv49i03, 5' ...   985   0.0    1
dna update 2008.10.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromos...   106   1e-21
CP001576_63(CP001576|pid:none) Micromonas sp. RCC299 chromosome ...    41   0.054
CP000864_5(CP000864|pid:none) Acinetobacter baumannii ACICU plas...    34   8.7
protein update 2009. 7. 4
PSORT 

 psg: 0.89  gvh: 0.63  alm: 0.32  top: 0.60  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: Golgi

>> prediction for VHF575 is cyt
5' end seq. ID VHF575F
5' end seq. 
>VHF575F.Seq
ATAATAATACAAAGAAGAAATGAAAAATATAAATAATAAAATTTTAAAGATTTTTATTCT
TTTTTTAGCAATATGCAGTGTTAAATCAGATACATGTCCAACAGATTCAAATTGGAGACC
AACACCAGCAAGTTCCAATTCACCAGTATCTCCAGCTTTGCCAACCACTTCTTTAGCCTC
TGATATTGTATATGGCGGTAATGATTTATATTACATGGCCTATTGGAGCATGACCGACCC
AAATAACCTTCAACCAGTTAGTGATGTTGAAAGTGAATTCTCTATTGCACTTCCAGCATG
GGCACCAGATTACTTTTTAATTGTTGCAAAACAATCAGCTCCAGCCCTTAAAGCCAATAC
TAATTATCAATTTTCATTTGATTTCAAATTAAGCCAAGTTTTGACTCAAGGTATTACCTA
TTCAAATATGACTCTTTCATTCTACAAACCAAGTGATATTGATTATCTTTTATGGAGTTA
TAGAGCACCAATGTATTCTTTTACTTTTACCGGTGATTTTTCATCAACTACATATAAAAG
TAAAACCATTACTTTCAGTGTTCCAGTTGATCTTGGNNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID VHF575Z
3' end seq. 
>VHF575Z.Seq
NNNNNNNNNNTTACAAGTTTGGGCTGCCCAAGTCGCNTATCAACAATATATCTTTTTGGC
AATTCCATATCCACCAGGTACAACATTCACCATTTCAACTGAAAATAAATGGGCTTGGCA
AAATGCTTATGGTTTCAATTGTANTCTTGCTTCATCTGCTGCTGAAGTTAGAAGTAGTAA
TGGAACCAAATACTATTTCGATCAAACTCATTTATTCGTTAAAATTGTTAACCCAGTTTT
AACAGGTTCTCCAGCTGAATCTTTCAATAGAGGTGGTGCTAAAATTGATGACGTTTATTG
GGAATACATTTACCATATCAATGCTACAAATCCAAATGTTTCTCCAAATCAAGAGGTTTC
TATACAAATTTATCTTATACTTTACCTNCTTCAACTT
Length of 3' end seq. 397
Connected seq. ID VHF575P
Connected seq. 
>VHF575P.Seq
ATAATAATACAAAGAAGAAATGAAAAATATAAATAATAAAATTTTAAAGATTTTTATTCT
TTTTTTAGCAATATGCAGTGTTAAATCAGATACATGTCCAACAGATTCAAATTGGAGACC
AACACCAGCAAGTTCCAATTCACCAGTATCTCCAGCTTTGCCAACCACTTCTTTAGCCTC
TGATATTGTATATGGCGGTAATGATTTATATTACATGGCCTATTGGAGCATGACCGACCC
AAATAACCTTCAACCAGTTAGTGATGTTGAAAGTGAATTCTCTATTGCACTTCCAGCATG
GGCACCAGATTACTTTTTAATTGTTGCAAAACAATCAGCTCCAGCCCTTAAAGCCAATAC
TAATTATCAATTTTCATTTGATTTCAAATTAAGCCAAGTTTTGACTCAAGGTATTACCTA
TTCAAATATGACTCTTTCATTCTACAAACCAAGTGATATTGATTATCTTTTATGGAGTTA
TAGAGCACCAATGTATTCTTTTACTTTTACCGGTGATTTTTCATCAACTACATATAAAAG
TAAAACCATTACTTTCAGTGTTCCAGTTGATCTTGG----------TTACAAGTTTGGGC
TGCCCAAGTCGCNTATCAACAATATATCTTTTTGGCAATTCCATATCCACCAGGTACAAC
ATTCACCATTTCAACTGAAAATAAATGGGCTTGGCAAAATGCTTATGGTTTCAATTGTAN
TCTTGCTTCATCTGCTGCTGAAGTTAGAAGTAGTAATGGAACCAAATACTATTTCGATCA
AACTCATTTATTCGTTAAAATTGTTAACCCAGTTTTAACAGGTTCTCCAGCTGAATCTTT
CAATAGAGGTGGTGCTAAAATTGATGACGTTTATTGGGAATACATTTACCATATCAATGC
TACAAATCCAAATGTTTCTCCAAATCAAGAGGTTTCTATACAAATTTATCTTATACTTTA
CCTNCTTCAACTT
Length of connected seq. 963
Full length Seq ID -
Full length Seq. -
Length of full length seq. -