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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF631
Library VH
(Link to library)
Clone ID VHF631
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF631 (VHF631Q) /CSM/VH/VHF6-B/VHF631Q.Seq.d/
GAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGNGGTGGTCCAGTTGGTTTGGCT
ACTGCCTACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTC
TTTAATGGANGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAA
GATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGAT
GCTGGTGAANGTGATTTATTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTAT
GGTGCANGTGGTCCAGAANGTACTTTATTANGACCAATTCCAAATTTATAGAGATTGGGT
ATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGANTATCCATTTANAAACATT
CCATCCAATCACCAAAGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTA
TTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAATGGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
EFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGXGSSGDVVRMLRTMYTE
DYMADLAHETLGLWKELGDDAGEXDLFWMTGLLNFGDPNYGAXGPEXTLLXPIPNL*rlg
mqykvltaqeimexypfxnipsnhqsvfapdngvinlplvlrslyklclqygckm---
Translated Amino Acid sequence (All Frames) 
Frame A:
EFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGXGSSGDVVRMLRTMYTE
DYMADLAHETLGLWKELGDDAGEXDLFWMTGLLNFGDPNYGAXGPEXTLLXPIPNL*rlg
mqykvltaqeimexypfxnipsnhqsvfapdngvinlplvlrslyklclqygckm---


Frame B:
nf*kmimm**fvxvvqlvwllptdvpklerkyfvsknqyslmxvvvvvmllecyvqctlk
iiwpi*hmkpldsgknlvmmlvxviyfg*qvs*ilviqimvxvvqxvlyxdqfqiyrdwv
cntkc*llkklwkxihlxtfhpitkvfllqtmvlsiyhwyyvlftsyvynmvvk---


Frame C:
ifkr*l*cnslwxwsswfgyclqmcqswkestlsrkisil*wxw**w*cc*nvtynvh*r
lygrfst*npwtlertw**cw*x*filddrspkfw*sklwcxwsrxyfixtnskfieigy
aiqsvncsrnygrxsixkhsiqspkcfcsrqwcyqftigitfslqvmftiwl*n---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF631 (VHF631Q) /CSM/VH/VHF6-B/VHF631Q.Seq.d/                        995   0.0
VHN277 (VHN277Q) /CSM/VH/VHN2-D/VHN277Q.Seq.d/                        971   0.0
VHO630 (VHO630Q) /CSM/VH/VHO6-B/VHO630Q.Seq.d/                        965   0.0
VHN758 (VHN758Q) /CSM/VH/VHN7-C/VHN758Q.Seq.d/                        965   0.0
VHN479 (VHN479Q) /CSM/VH/VHN4-D/VHN479Q.Seq.d/                        965   0.0
VHN139 (VHN139Q) /CSM/VH/VHN1-B/VHN139Q.Seq.d/                        965   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                        963   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                        963   0.0
VHQ355 (VHQ355Q) /CSM/VH/VHQ3-C/VHQ355Q.Seq.d/                        963   0.0
VHP888 (VHP888Q) /CSM/VH/VHP8-D/VHP888Q.Seq.d/                        963   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421374) Dictyostelium discoideum cDNA clone:ddv42m08, 5' ...   991   0.0    1
(BJ426018) Dictyostelium discoideum cDNA clone:ddv57i20, 5' ...   967   0.0    1
(BJ426829) Dictyostelium discoideum cDNA clone:ddv60k08, 5' ...   961   0.0    1
(BJ426302) Dictyostelium discoideum cDNA clone:ddv58d15, 5' ...   961   0.0    1
(BJ426038) Dictyostelium discoideum cDNA clone:ddv57n20, 5' ...   961   0.0    1
(BJ425891) Dictyostelium discoideum cDNA clone:ddv57m09, 5' ...   961   0.0    1
(BJ427810) Dictyostelium discoideum cDNA clone:ddv63n13, 5' ...   959   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...   959   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...   959   0.0    1
(BJ427603) Dictyostelium discoideum cDNA clone:ddv62p22, 5' ...   959   0.0    1
dna update 2008.10.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   191   1e-47
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...    96   8e-19
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    77   2e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    77   3e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    76   6e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    74   2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    74   2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    74   2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    74   2e-12
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    73   4e-12
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHF631 is cyt
5' end seq. ID VHF631F
5' end seq. 
>VHF631F.Seq
GAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGNGGTGGTCCAGTTGGTTTGGCT
ACTGCCTACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTC
TTTAATGGANGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACAATGTACACTGAA
GATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGAT
GCTGGTGAANGTGATTTATTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTAT
GGTGCANGTGGTCCAGAANGTACTTTATTANGACCAATTCCAAATTTATAGAGATTGGGT
ATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGANTATCCATTTANAAACATT
CCATCCAATCACCAAAGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCATTGGTA
TTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAATGGNNNNNNNNNN
Length of 5' end seq. 536
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -