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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI203
Library VH
(Link to library)
Clone ID VHI203
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12164-1|Contig-U13677-1
Original site URL
Representative seq. ID VHI203P
(Link to Original site)
Representative DNA sequence 
>VHI203 (VHI203Q) /CSM/VH/VHI2-A/VHI203Q.Seq.d/
CAAAGAACAATGCAACTTTCAAGTATGATTGATTATTTAACTAATCCAAAATCAGCGATT
CCTTCAATCACTACCATTTTCTTATTAAATAATATTTTATCTTATGAATTTATTACCTCT
CAATCATTGGATGGTCATTTAAATAATACAAGAGATGCAATTATTAATTCAATTAAATCT
ACTATAGTTCAACAAGGTGGAAGTAATAATAATAAGAATTTATTAATTTCAATTCAAGAT
TTTAAATTATCAATTAATTTATTAACAAATTTAATTAAGTTGGTACCAAAGAGTATAAAT
TTATTATGGGATGTATTTTATAATTCTTATGTACCATTATTAGAATCATTTACAAATAAT
AATTCACCAATAATGTCACCAAGTATTTCAAATTCACCAACTTCAATCTCATCTGATAAT
TATGAAAAACAATTACAAAAACAACAAGAACAACATCAACACTATTTAATGGATCAAGAG
ATTGAGAATCAATATTTAGATGCAATAACTAATTTCTTTGGTATGTTGGCAATTGATGGT
CATTTATCATCGGCTGTATTTCATATTATTAGTAGTGATACATTGGAACAAATGAATTAT
ATCCTATCGGAAACTATATTTGGTAATGTTGTGGTAATATTATTTTCAATXXXXXXXXXX
TTGATTTTCCCAAATAATCATGAAAATCCTTCAAGATTATTGAAAACTTGTATCCAAGAG
AATTGTCATTTATTAATGTATATTATAGCCATTCAAAGTCAACGTAATGATACTTTAAAT
CTTTNTGAATTCATTCAAGATGTAATTAATATTACCTTTAGAAATAATCATGAATATGAA
CTTTGGTTATNTTGGATGTTGGTAATTAAATTAATTGAAAATCAATNTCAATCAAGTTTT
AAAAATAAACATTTAATTCAATNTATTTCAGATTTTAAAGATTCAATATCATCATATTTT
GGAACAGCTGGTAATAAGATAACATCATTATTTTCAAATAAACAAAAGACAATAATGGTA
CAGACTCATTTAGCAGCAAGAGCATGTTTATTATATTTACAGAGAATATTGGTTCAAAGA
AAAGAAAAAGATGGTGAAAAAACAATCAAAGATGTTCAATTATTAAATCAAATCACTGAT
AGTCTCGTTGATTTGAAAAAGAAATCAACCAATAATATNTATTCACCATATCAAGATTTN
TTTAATGAATCAGAAAACTTTTTATCACCATTGGTAGAATTTGAATTCTTTTCAAACTCT
GTCATTAGAACTCTTGNACCNTTTGCAAATTATATTTTAAATATTTTATCTTAGAATAAA
AAAAAAATAATAATAACAATAAATAATAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
QRTMQLSSMIDYLTNPKSAIPSITTIFLLNNILSYEFITSQSLDGHLNNTRDAIINSIKS
TIVQQGGSNNNKNLLISIQDFKLSINLLTNLIKLVPKSINLLWDVFYNSYVPLLESFTNN
NSPIMSPSISNSPTSISSDNYEKQLQKQQEQHQHYLMDQEIENQYLDAITNFFGMLAIDG
HLSSAVFHIISSDTLEQMNYILSETIFGNVVVILFS---

---LIFPNNHENPSRLLKTCIQENCHLLMYIIAIQSQRNDTLNLXEFIQDVINITFRNNH
EYELWLXWMLVIKLIENQXQSSFKNKHLIQXISDFKDSISSYFGTAGNKITSLFSNKQKT
IMVQTHLAARACLLYLQRILVQRKEKDGEKTIKDVQLLNQITDSLVDLKKKSTNNXYSPY
QDXFNESENFLSPLVEFEFFSNSVIRTLXPFANYILNILS*nkkkiiitinnn
Translated Amino Acid sequence (All Frames) 
Frame A:
QRTMQLSSMIDYLTNPKSAIPSITTIFLLNNILSYEFITSQSLDGHLNNTRDAIINSIKS
TIVQQGGSNNNKNLLISIQDFKLSINLLTNLIKLVPKSINLLWDVFYNSYVPLLESFTNN
NSPIMSPSISNSPTSISSDNYEKQLQKQQEQHQHYLMDQEIENQYLDAITNFFGMLAIDG
HLSSAVFHIISSDTLEQMNYILSETIFGNVVVILFS---

---LIFPNNHENPSRLLKTCIQENCHLLMYIIAIQSQRNDTLNLXEFIQDVINITFRNNH
EYELWLXWMLVIKLIENQXQSSFKNKHLIQXISDFKDSISSYFGTAGNKITSLFSNKQKT
IMVQTHLAARACLLYLQRILVQRKEKDGEKTIKDVQLLNQITDSLVDLKKKSTNNXYSPY
QDXFNESENFLSPLVEFEFFSNSVIRTLXPFANYILNILS*nkkkiiitinnn

Frame B:
keqcnfqv*lii*liqnqrflqslpfsy*iifylmnllplnhwmvi*iiqemqlliqlnl
l*fnkveviiiriy*fqfkilnyqliy*qi*lswyqrv*iyygmyfiilmyhy*nhlqii
ihq*chqvfqihqlqshliimknnyknnknninti*wikrlrini*mq*lislvcwqlmv
iyhrlyfillvvihwnk*iisyrklylvmlw*yyfq---

---*fsqiimkilqdy*klvskriviy*cil*pfkvnvmil*ifxnsfkm*lilpleiim
nmnfgyxgcw*ln*lkinxnqvlkini*fnxfqilkiqyhhileqlvir*hhyfqinkrq
*wyrli*qqehvyyiyreywfkekkkmvkkqskmfny*ikslivsli*krnqpiixihhi
kixlmnqktfyhhw*nlnsfqtlslellxxlqiif*ifylrikkk***q*iii

Frame C:
knnatfkyd*lfn*skisdsfnhyhflik*yfil*iyylsiigwsfk*ykrcny*fn*iy
ysstrwk****efinfnsrf*iin*finkfn*vgtkeykfimgcil*flctiiriiyk**
ftnnvtkyfkftnfnli**l*ktitkttrttstlfngsrd*esifrcnn*flwyvgn*ws
fiigcisyy***yigtnelypignyiw*ccgniifn---

---dfpk*s*ksfkiienlyprelsfinvyyshskst**yfksx*ihsrcn*yyl*k*s*
i*tlvxldvgn*in*ksxsikf*k*tfnsxyfrf*rfniiifwnsw**dniiifk*tkdn
ngtdsfssksmfiiftenigskkrkrw*knnqrcsiiksnh**sr*fekeinq*yxftis
rfx**irklfitigri*ilfklch*nsxtxcklyfkyfile*kknnnnnk**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI203 (VHI203Q) /CSM/VH/VHI2-A/VHI203Q.Seq.d/                       1499   0.0
VHN171 (VHN171Q) /CSM/VH/VHN1-C/VHN171Q.Seq.d/                        799   0.0
SLF274 (SLF274Q) /CSM/SL/SLF2-D/SLF274Q.Seq.d/                        476   e-133
SFK559 (SFK559Q) /CSM/SF/SFK5-C/SFK559Q.Seq.d/                        309   6e-83
SSK369 (SSK369Q) /CSM/SS/SSK3-C/SSK369Q.Seq.d/                         60   9e-08
VHL355 (VHL355Q) /CSM/VH/VHL3-C/VHL355Q.Seq.d/                         48   4e-04
VHL309 (VHL309Q) /CSM/VH/VHL3-A/VHL309Q.Seq.d/                         48   4e-04
VFJ386 (VFJ386Q) /CSM/VF/VFJ3-D/VFJ386Q.Seq.d/                         48   4e-04
SHC156 (SHC156Q) /CSM/SH/SHC1-C/SHC156Q.Seq.d/                         48   4e-04
CHQ609 (CHQ609Q) /CSM/CH/CHQ6-A/CHQ609Q.Seq.d/                         48   4e-04
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444862) Dictyostelium discoideum cDNA clone:ddv57m17, 3' ...   799   0.0    2
(BJ441546) Dictyostelium discoideum cDNA clone:ddv47e02, 3' ...   799   0.0    2
(BJ422788) Dictyostelium discoideum cDNA clone:ddv47e02, 5' ...   737   0.0    2
(BJ425966) Dictyostelium discoideum cDNA clone:ddv57m17, 5' ...   605   0.0    2
(AU052889) Dictyostelium discoideum slug cDNA, clone SLF274.      476   0.0    2
(BJ390471) Dictyostelium discoideum cDNA clone:dds22e15, 5' ...   309   1e-79  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    48   1e-06  20
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   2e-05  12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    44   2e-05  13
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   2e-05  16
dna update 2008.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF325215_2(AF325215|pid:none) Lymphocytic choriomeningitis virus...    38   0.96
AF160864_24(AF160864|pid:none) Tetrahymena pyriformis mitochondr...    37   1.3
AE017351_256(AE017351|pid:none) Cryptococcus neoformans var. neo...    36   2.8
AY815090_1(AY815090|pid:none) Schistosoma japonicum SJCHGC03255 ...    36   2.8
EU480452_2(EU480452|pid:none) Lymphocytic choriomeningitis virus...    35   6.2
(P08696) RecName: Full=Bacteriocin BCN5;  &A30481(A30481;S03779)...    35   8.2
AF325214_2(AF325214|pid:none) Lymphocytic choriomeningitis virus...    35   8.2
BX294151_109(BX294151|pid:none) Rhodopirellula baltica SH 1 comp...    35   8.2
FM992693_270(FM992693|pid:none) Candida dubliniensis CD36 chromo...    35   8.2
protein update 2009. 3.11
PSORT 

 psg: 0.67  gvh: 0.48  alm: 0.30  top: 0.77  tms: 0.07  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for VHI203 is nuc
5' end seq. ID VHI203F
5' end seq. 
>VHI203F.Seq
CAAAGAACAATGCAACTTTCAAGTATGATTGATTATTTAACTAATCCAAAATCAGCGATT
CCTTCAATCACTACCATTTTCTTATTAAATAATATTTTATCTTATGAATTTATTACCTCT
CAATCATTGGATGGTCATTTAAATAATACAAGAGATGCAATTATTAATTCAATTAAATCT
ACTATAGTTCAACAAGGTGGAAGTAATAATAATAAGAATTTATTAATTTCAATTCAAGAT
TTTAAATTATCAATTAATTTATTAACAAATTTAATTAAGTTGGTACCAAAGAGTATAAAT
TTATTATGGGATGTATTTTATAATTCTTATGTACCATTATTAGAATCATTTACAAATAAT
AATTCACCAATAATGTCACCAAGTATTTCAAATTCACCAACTTCAATCTCATCTGATAAT
TATGAAAAACAATTACAAAAACAACAAGAACAACATCAACACTATTTAATGGATCAAGAG
ATTGAGAATCAATATTTAGATGCAATAACTAATTTCTTTGGTATGTTGGCAATTGATGGT
CATTTATCATCGGCTGTATTTCATATTATTAGTAGTGATACATTGGAACAAATGAATTAT
ATCCTATCGGAAACTATATTTGGTAATGTTGTGGTAATATTATTTTCAATNNNNNNNNNN
Length of 5' end seq. 660
3' end seq. ID VHI203Z
3' end seq. 
>VHI203Z.Seq
NNNNNNNNNNTTGATTTTCCCAAATAATCATGAAAATCCTTCAAGATTATTGAAAACTTG
TATCCAAGAGAATTGTCATTTATTAATGTATATTATAGCCATTCAAAGTCAACGTAATGA
TACTTTAAATCTTTNTGAATTCATTCAAGATGTAATTAATATTACCTTTAGAAATAATCA
TGAATATGAACTTTGGTTATNTTGGATGTTGGTAATTAAATTAATTGAAAATCAATNTCA
ATCAAGTTTTAAAAATAAACATTTAATTCAATNTATTTCAGATTTTAAAGATTCAATATC
ATCATATTTTGGAACAGCTGGTAATAAGATAACATCATTATTTTCAAATAAACAAAAGAC
AATAATGGTACAGACTCATTTAGCAGCAAGAGCATGTTTATTATATTTACAGAGAATATT
GGTTCAAAGAAAAGAAAAAGATGGTGAAAAAACAATCAAAGATGTTCAATTATTAAATCA
AATCACTGATAGTCTCGTTGATTTGAAAAAGAAATCAACCAATAATATNTATTCACCATA
TCAAGATTTNTTTAATGAATCAGAAAACTTTTTATCACCATTGGTAGAATTTGAATTCTT
TTCAAACTCTGTCATTAGAACTCTTGNACCNTTTGCAAATTATATTTTAAATATTTTATC
TTAGAATAAAAAAAAAATAATAATAACAATAAATAATAATA
Length of 3' end seq. 701
Connected seq. ID VHI203P
Connected seq. 
>VHI203P.Seq
CAAAGAACAATGCAACTTTCAAGTATGATTGATTATTTAACTAATCCAAAATCAGCGATT
CCTTCAATCACTACCATTTTCTTATTAAATAATATTTTATCTTATGAATTTATTACCTCT
CAATCATTGGATGGTCATTTAAATAATACAAGAGATGCAATTATTAATTCAATTAAATCT
ACTATAGTTCAACAAGGTGGAAGTAATAATAATAAGAATTTATTAATTTCAATTCAAGAT
TTTAAATTATCAATTAATTTATTAACAAATTTAATTAAGTTGGTACCAAAGAGTATAAAT
TTATTATGGGATGTATTTTATAATTCTTATGTACCATTATTAGAATCATTTACAAATAAT
AATTCACCAATAATGTCACCAAGTATTTCAAATTCACCAACTTCAATCTCATCTGATAAT
TATGAAAAACAATTACAAAAACAACAAGAACAACATCAACACTATTTAATGGATCAAGAG
ATTGAGAATCAATATTTAGATGCAATAACTAATTTCTTTGGTATGTTGGCAATTGATGGT
CATTTATCATCGGCTGTATTTCATATTATTAGTAGTGATACATTGGAACAAATGAATTAT
ATCCTATCGGAAACTATATTTGGTAATGTTGTGGTAATATTATTTTCAAT----------
TTGATTTTCCCAAATAATCATGAAAATCCTTCAAGATTATTGAAAACTTGTATCCAAGAG
AATTGTCATTTATTAATGTATATTATAGCCATTCAAAGTCAACGTAATGATACTTTAAAT
CTTTNTGAATTCATTCAAGATGTAATTAATATTACCTTTAGAAATAATCATGAATATGAA
CTTTGGTTATNTTGGATGTTGGTAATTAAATTAATTGAAAATCAATNTCAATCAAGTTTT
AAAAATAAACATTTAATTCAATNTATTTCAGATTTTAAAGATTCAATATCATCATATTTT
GGAACAGCTGGTAATAAGATAACATCATTATTTTCAAATAAACAAAAGACAATAATGGTA
CAGACTCATTTAGCAGCAAGAGCATGTTTATTATATTTACAGAGAATATTGGTTCAAAGA
AAAGAAAAAGATGGTGAAAAAACAATCAAAGATGTTCAATTATTAAATCAAATCACTGAT
AGTCTCGTTGATTTGAAAAAGAAATCAACCAATAATATNTATTCACCATATCAAGATTTN
TTTAATGAATCAGAAAACTTTTTATCACCATTGGTAGAATTTGAATTCTTTTCAAACTCT
GTCATTAGAACTCTTGNACCNTTTGCAAATTATATTTTAAATATTTTATCTTAGAATAAA
AAAAAAATAATAATAACAATAAATAATAATA
Length of connected seq. 1341
Full length Seq ID -
Full length Seq. -
Length of full length seq. -