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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI596
Library VH
(Link to library)
Clone ID VHI596
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHI596P
(Link to Original site)
Representative DNA sequence 
>VHI596 (VHI596Q) /CSM/VH/VHI5-D/VHI596Q.Seq.d/
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGXXXXXXXXXXGGTTTTTAATN
AATCAAAACCCATTNTCNTTTTTTTTTNTTTNTTTTTTTTTTTTTTAGAAAAAAAAACCT
AATAATAGTAATAATAAAAANAGTAATAATAAAAACAGTAATAATAATAANAAAAACAAG
GAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGA---

---VFNXSKPIXXFFXXFFFFLEKKT******kx***kq****xkqgn
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvm
llecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvq---

---gf*xikthxxffxfxffffrkknliiviikxviiktviiixktrk

Frame B:
fyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwc---

---VFNXSKPIXXFFXXFFFFLEKKT******kx***kq****xkqgn

Frame C:
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGA---

---flxnqnpxsfffxxffff*kkkpnnsnnkxsnnknsnnnxknke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ455 (VHQ455Q) /CSM/VH/VHQ4-C/VHQ455Q.Seq.d/                        672   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                        672   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                        672   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                        672   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                        672   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                        672   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                        672   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                        672   0.0
VHM737 (VHM737Q) /CSM/VH/VHM7-B/VHM737Q.Seq.d/                        672   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                        672   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427811) Dictyostelium discoideum cDNA clone:ddv63n14, 5' ...   670   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...   670   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...   670   0.0    1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...   670   0.0    1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...   670   0.0    1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...   670   0.0    1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...   670   0.0    1
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ...   670   0.0    1
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ...   670   0.0    1
(BJ425638) Dictyostelium discoideum cDNA clone:ddv56j09, 5' ...   670   0.0    1
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   118   6e-26
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...    77   2e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    62   9e-09
CR859295_1(CR859295|pid:none) Pongo abelii mRNA; cDNA DKFZp469L1...    62   9e-09
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    62   9e-09
BC116493_1(BC116493|pid:none) Danio rerio similar to Peroxisomal...    61   1e-08
BC124587_1(BC124587|pid:none) Danio rerio similar to Peroxisomal...    61   1e-08
BC096805_1(BC096805|pid:none) Danio rerio similar to Peroxisomal...    61   1e-08
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    61   2e-08
BC027622_1(BC027622|pid:none) Homo sapiens pipecolic acid oxidas...    61   2e-08
protein update 2009. 7.13
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHI596 is cyt
5' end seq. ID VHI596F
5' end seq. 
>VHI596F.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGNNNNNNNNNN
Length of 5' end seq. 349
3' end seq. ID VHI596Z
3' end seq. 
>VHI596Z.Seq
NNNNNNNNNNGGTTTTTAATNAATCAAAACCCATTNTCNTTTTTTTTTNTTTNTTTTTTT
TTTTTTTAGAAAAAAAAACCTAATAATAGTAATAATAAAAANAGTAATAATAAAAACAGT
AATAATAATAANAAAAACAAGGAAAT
Length of 3' end seq. 146
Connected seq. ID VHI596P
Connected seq. 
>VHI596P.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAG----------GGTTTTTAATN
AATCAAAACCCATTNTCNTTTTTTTTTNTTTNTTTTTTTTTTTTTTAGAAAAAAAAACCT
AATAATAGTAATAATAAAAANAGTAATAATAAAAACAGTAATAATAATAANAAAAACAAG
GAAAT
Length of connected seq. 475
Full length Seq ID -
Full length Seq. -
Length of full length seq. -