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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI816
Library VH
(Link to library)
Clone ID VHI816
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHI816P
(Link to Original site)
Representative DNA sequence 
>VHI816 (VHI816Q) /CSM/VH/VHI8-A/VHI816Q.Seq.d/
ATTATTTTATTTTATAAGCCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGAT
GTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCT
GGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGT
GATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACAT
GAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGG
ATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACT
TTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCT
CAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTT
GCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGT
TTACAATAXXXXXXXXXXTTAATCAAATTATGTATGGCCAATCTTGCTGAAGTTCACAAT
GTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGNANAAT
GATGATTATTCATCAGGNGCATTTGCTNTTTACAGTCCATCNCAATTTTTTCAATTGTTC
CCATCNCTTACTAAACCATCNCCAGATGGTAGATTCCNTTTAGNTGGNGAAGCAACATNT
GTTCATCANGGNTGGGTCATTGGTTNTTTTAACTNTGCCTATCGTTCAGTCGATCNCATT
TTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATC
GANGAAGTTGAAGATCCNCAAGATGATCAACAATATGTTGACCCNCATCNCAATTTAAGN
GGTCCAAATGNTAAAAAATTCAGATCAAATGTATCNCAAGTTGCCNTTCAACCAANATTC
AAAGCTCCAANAAACTTTAAACCAANAAANACTGCT
sequence update 2002.10.25
Translated Amino Acid sequence 
IILFYKPLKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSG
DVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGT
LLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLC
LQ---

---LIKLCMANLAEVHNVPVXTLQQLFVDYKCWDWXNDDYSSGAFAXYSPSQFFQLFPSL
TKPSPDGRFXLXGEATXVHXGWVIGXFNXAYRSVDXIFQVEGXDELRAKLRXNWGFIXEV
EDPQDDQQYVDPHXNLXGPNXKKFRSNVSQVAXQPXFKAPXNFKPXXTA
Translated Amino Acid sequence (All Frames) 
Frame A:
IILFYKPLKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSG
DVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGT
LLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLC
LQ---

---LIKLCMANLAEVHNVPVXTLQQLFVDYKCWDWXNDDYSSGAFAXYSPSQFFQLFPSL
TKPSPDGRFXLXGEATXVHXGWVIGXFNXAYRSVDXIFQVEGXDELRAKLRXNWGFIXEV
EDPQDDQQYVDPHXNLXGPNXKKFRSNVSQVAXQPXFKAPXNFKPXXTA

Frame B:
lfyfisl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvv
mllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvl
y*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyv
yn---

---*snyvwpillkftmfqsxpsnnyllitnvgigxmmiihqxhllftvhxnffncshxl
lnhxqmvdsx*xxkqhxfixxgslvxltxpivqsixffklkvlmsyxpnyvsigvssxkl
kixkminnmltxixi*xvqmxknsdqmyxklpfnqxsklqxtlnqxxl

Frame C:
yfil*afeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*
cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryf
irtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmf
ti---

---nqimygqsc*ssqcssrypptiic*lqmlglxx**lfirxicxlqsixifsivpixy
*tixrw*ipfxwxsnxcssxxghwxf*lclsfsrshfss*rx**vtxqitxqlgfhrxs*
rsxr*stic*pxsqfkxskx*kiqikcixscxstxiqssxkl*txkxc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI816 (VHI816Q) /CSM/VH/VHI8-A/VHI816Q.Seq.d/                       1844   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1070   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1070   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                       1070   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                       1070   0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/                       1070   0.0
VHM372 (VHM372Q) /CSM/VH/VHM3-C/VHM372Q.Seq.d/                       1070   0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/                       1070   0.0
VHL517 (VHL517Q) /CSM/VH/VHL5-A/VHL517Q.Seq.d/                       1070   0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/                       1070   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423147) Dictyostelium discoideum cDNA clone:ddv48p04, 5' ...  1086   0.0    1
(BJ427810) Dictyostelium discoideum cDNA clone:ddv63n13, 5' ...  1049   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...  1049   0.0    2
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...  1049   0.0    2
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...  1049   0.0    2
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...  1049   0.0    2
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...  1049   0.0    2
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...  1049   0.0    2
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ...  1049   0.0    2
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ...  1049   0.0    2
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   199   1e-49
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   108   2e-22
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    76   2e-12
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    75   3e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    75   3e-12
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    75   4e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    75   5e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    75   5e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    75   5e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    75   5e-12
protein update 2009. 7.14
PSORT 

 psg: 0.36  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHI816 is nuc
5' end seq. ID VHI816F
5' end seq. 
>VHI816F.Seq
ATTATTTTATTTTATAAGCCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGAT
GTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCT
GGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGT
GATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACAT
GAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGG
ATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACT
TTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCT
CAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTT
GCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGT
TTACAATANNNNNNNNNN
Length of 5' end seq. 558
3' end seq. ID VHI816Z
3' end seq. 
>VHI816Z.Seq
NNNNNNNNNNTTAATCAAATTATGTATGGCCAATCTTGCTGAAGTTCACAATGTTCCAGT
CGNTACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGNANAATGATGATTA
TTCATCAGGNGCATTTGCTNTTTACAGTCCATCNCAATTTTTTCAATTGTTCCCATCNCT
TACTAAACCATCNCCAGATGGTAGATTCCNTTTAGNTGGNGAAGCAACATNTGTTCATCA
NGGNTGGGTCATTGGTTNTTTTAACTNTGCCTATCGTTCAGTCGATCNCATTTTTCAAGT
TGAAGGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATCGANGAAGT
TGAAGATCCNCAAGATGATCAACAATATGTTGACCCNCATCNCAATTTAAGNGGTCCAAA
TGNTAAAAAATTCAGATCAAATGTATCNCAAGTTGCCNTTCAACCAANATTCAAAGCTCC
AANAAACTTTAAACCAANAAANACTGCT
Length of 3' end seq. 508
Connected seq. ID VHI816P
Connected seq. 
>VHI816P.Seq
ATTATTTTATTTTATAAGCCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGAT
GTAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCT
GGAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGT
GATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACAT
GAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGG
ATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACT
TTATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCT
CAAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTT
GCTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGT
TTACAATA----------TTAATCAAATTATGTATGGCCAATCTTGCTGAAGTTCACAAT
GTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATTACAAATGTTGGGATTGGNANAAT
GATGATTATTCATCAGGNGCATTTGCTNTTTACAGTCCATCNCAATTTTTTCAATTGTTC
CCATCNCTTACTAAACCATCNCCAGATGGTAGATTCCNTTTAGNTGGNGAAGCAACATNT
GTTCATCANGGNTGGGTCATTGGTTNTTTTAACTNTGCCTATCGTTCAGTCGATCNCATT
TTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATC
GANGAAGTTGAAGATCCNCAAGATGATCAACAATATGTTGACCCNCATCNCAATTTAAGN
GGTCCAAATGNTAAAAAATTCAGATCAAATGTATCNCAAGTTGCCNTTCAACCAANATTC
AAAGCTCCAANAAACTTTAAACCAANAAANACTGCT
Length of connected seq. 1046
Full length Seq ID -
Full length Seq. -
Length of full length seq. -