NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHJ851
Library VH
(Link to library)
Clone ID VHJ851
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHJ851 (VHJ851Q) /CSM/VH/VHJ8-C/VHJ851Q.Seq.d/
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEY---
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvm
llecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvly
*dqfqi*rdwvcntkc*llkklwks---


Frame B:
fyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfi
rtnskfreigyaiqsvncsrnygrv---


Frame C:
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEY---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ455 (VHQ455Q) /CSM/VH/VHQ4-C/VHQ455Q.Seq.d/                        868   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                        868   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                        868   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                        868   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                        868   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                        868   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                        868   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                        868   0.0
VHM737 (VHM737Q) /CSM/VH/VHM7-B/VHM737Q.Seq.d/                        868   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                        868   0.0
own update 2004. 5.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427811) Dictyostelium discoideum cDNA clone:ddv63n14, 5' ...   868   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...   868   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...   868   0.0    1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...   868   0.0    1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...   868   0.0    1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...   868   0.0    1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...   868   0.0    1
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ...   868   0.0    1
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ...   868   0.0    1
(BJ425638) Dictyostelium discoideum cDNA clone:ddv56j09, 5' ...   868   0.0    1
dna update 2008.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   159   4e-38
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...    86   3e-16
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    67   3e-10
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    67   3e-10
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    66   3e-10
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    63   3e-09
BC027622_1(BC027622|pid:none) Homo sapiens pipecolic acid oxidas...    63   3e-09
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    63   3e-09
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    63   3e-09
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    63   3e-09
protein update 2009. 7.14
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VHJ851 is cyt
5' end seq. ID VHJ851F
5' end seq. 
>VHJ851F.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCNNNNNNNNNN
Length of 5' end seq. 448
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -