VHK674
Library VH
(Link to library)
Clone ID VHK674
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHK674 (VHK674Q) /CSM/VH/VHK6-D/VHK674Q.Seq.d/
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACGAGTTATGTT
TACAATATGGTTGTAAAATGGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYELCL
QYGCKM---


Translated Amino Acid sequence (All Frames)
Frame A:
iilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvv
mllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvl
y*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyv
ynmvvk---


Frame B:
lfyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*
cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryf
irtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslrvmf
tiwl*n---


Frame C:
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYELCL
QYGCKM---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK674 (VHK674Q) /CSM/VH/VHK6-D/VHK674Q.Seq.d/ 1112 0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1104 0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 1104 0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/ 1104 0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/ 1104 0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/ 1104 0.0
VHM372 (VHM372Q) /CSM/VH/VHM3-C/VHM372Q.Seq.d/ 1104 0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/ 1104 0.0
VHL517 (VHL517Q) /CSM/VH/VHL5-A/VHL517Q.Seq.d/ 1104 0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/ 1104 0.0

own update 2003. 1. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ424530) Dictyostelium discoideum cDNA clone:ddv52c20, 5' ... 1108 0.0 1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ... 1100 0.0 1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ... 1100 0.0 1
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ... 1100 0.0 1
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ... 1100 0.0 1
(BJ425519) Dictyostelium discoideum cDNA clone:ddv56a04, 5' ... 1100 0.0 1
(BJ425442) Dictyostelium discoideum cDNA clone:ddv55p17, 5' ... 1100 0.0 1
(BJ425148) Dictyostelium discoideum cDNA clone:ddv54d24, 5' ... 1100 0.0 1
(BJ424903) Dictyostelium discoideum cDNA clone:ddv54a05, 5' ... 1100 0.0 1
(BJ424606) Dictyostelium discoideum cDNA clone:ddv53a05, 5' ... 1100 0.0 1
dna update 2008.11.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 204 2e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 109 5e-23
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 78 1e-13
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 78 1e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 77 2e-13
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 77 2e-13
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 77 2e-13
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 77 2e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 77 3e-13
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 76 6e-13
protein update 2009. 7.15
PSORT

psg: 0.67 gvh: 0.49 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VHK674 is cyt

5' end seq. ID VHK674F
5' end seq.
>VHK674F.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACGAGTTATGTT
TACAATATGGTTGTAAAATGGNNNNNNNNNN
Length of 5' end seq. 571
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -