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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL817
Library VH
(Link to library)
Clone ID VHL817
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL817 (VHL817Q) /CSM/VH/VHL8-A/VHL817Q.Seq.d/
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCNAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCNC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAANCTTATGTTTA
CAATATGGTTGTAAAATGGTAAGCCATGCAGAAGTTAAACTTATTAAAAATCTTAGCACA
ACAATGGTTGAAATTGAAGTTGAACACACCGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYXLMFT
IWL*ngkpcrs*ty*ks*hnng*n*s*th---
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvm
llecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviximvqvvqkvly
*dqfqi*rdwvcntkc*llkklwksihletfhpitkvflxqtmvlsiyhwyyvlftxlcl
qygckmvshaevkliknlsttmveieveht---


Frame B:
fyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sxlwcrwsrryfi
rtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcxrqwcyqftigitfslqxyvy
nmvvkw*amqklnllkilaqqwlklklnt---


Frame C:
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYXLMFT
IWL*ngkpcrs*ty*ks*hnng*n*s*th---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL817 (VHL817Q) /CSM/VH/VHL8-A/VHL817Q.Seq.d/                       1233   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1217   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1217   0.0
VHH234 (VHH234Q) /CSM/VH/VHH2-B/VHH234Q.Seq.d/                       1217   0.0
SHJ205 (SHJ205Q) /CSM/SH/SHJ2-A/SHJ205Q.Seq.d/                       1217   0.0
VHK414 (VHK414Q) /CSM/VH/VHK4-A/VHK414Q.Seq.d/                       1211   0.0
VHH631 (VHH631Q) /CSM/VH/VHH6-B/VHH631Q.Seq.d/                       1211   0.0
VHQ455 (VHQ455Q) /CSM/VH/VHQ4-C/VHQ455Q.Seq.d/                       1209   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1209   0.0
VHI452 (VHI452Q) /CSM/VH/VHI4-C/VHI452Q.Seq.d/                       1207   0.0
own update 2003. 1. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424910) Dictyostelium discoideum cDNA clone:ddv54b06, 5' ...  1231   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...  1037   0.0    2
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...  1037   0.0    2
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...  1037   0.0    2
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...  1037   0.0    2
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...  1037   0.0    2
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...  1037   0.0    2
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ...  1037   0.0    2
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ...  1037   0.0    2
(BJ425519) Dictyostelium discoideum cDNA clone:ddv56a04, 5' ...  1037   0.0    2
dna update 2008.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   199   7e-50
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   108   1e-22
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    75   1e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    75   1e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    75   2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    75   2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    75   2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    75   2e-12
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    74   4e-12
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    74   5e-12
protein update 2009. 7.16
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VHL817 is cyt
5' end seq. ID VHL817F
5' end seq. 
>VHL817F.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCNAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCNC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAANCTTATGTTTA
CAATATGGTTGTAAAATGGTAAGCCATGCAGAAGTTAAACTTATTAAAAATCTTAGCACA
ACAATGGTTGAAATTGAAGTTGAACACACCGNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -