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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN233
Library VH
(Link to library)
Clone ID VHN233
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHN233 (VHN233Q) /CSM/VH/VHN2-B/VHN233Q.Seq.d/
ATTTTGATATATTTTCCAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTG
AAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCA
GTTGGTTTGGCTACTGCTTACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAA
AAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACA
ATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAA
CTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGT
GATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTA
GAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCA
TTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAAT
TTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAATGGTA
AGCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
iliyfpifflffyyfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLE
KSVFFNGGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFG
DPNYGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVIN
LPLVLRSLYKLCLQYGCKMV---
Translated Amino Acid sequence (All Frames) 
Frame A:
iliyfpifflffyyfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLE
KSVFFNGGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFG
DPNYGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVIN
LPLVLRSLYKLCLQYGCKMV---


Frame B:
f*yifqsffyffiilfykl*rk*enf*kmimm**fvvvvqlvwllltdvpklerkyfvsk
nqyslmevvvvvmllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilv
iqimvqvvqkvly*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsi
yhwyyvlftsyvynmvvkw*---


Frame C:
fdifsnlffifllfyfisfeenerifkr*l*cnslwwwsswfgyclqmcqswkestlsrk
isil*wrw**w*cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*
sklwcrwsrryfirtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqf
tigitfslqvmftiwl*ngk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN233 (VHN233Q) /CSM/VH/VHN2-B/VHN233Q.Seq.d/                       1092   0.0
VHO630 (VHO630Q) /CSM/VH/VHO6-B/VHO630Q.Seq.d/                       1086   0.0
VHN479 (VHN479Q) /CSM/VH/VHN4-D/VHN479Q.Seq.d/                       1086   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1084   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1084   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1084   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1084   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1084   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1084   0.0
VHN277 (VHN277Q) /CSM/VH/VHN2-D/VHN277Q.Seq.d/                       1084   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425831) Dictyostelium discoideum cDNA clone:ddv57a10, 5' ...  1092   0.0    2
(BJ426829) Dictyostelium discoideum cDNA clone:ddv60k08, 5' ...  1086   0.0    1
(BJ426038) Dictyostelium discoideum cDNA clone:ddv57n20, 5' ...  1086   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...  1084   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...  1084   0.0    1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...  1084   0.0    1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...  1084   0.0    1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...  1084   0.0    1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...  1084   0.0    1
(BJ426018) Dictyostelium discoideum cDNA clone:ddv57i20, 5' ...  1084   0.0    1
dna update 2008.12. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   204   2e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   109   5e-23
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    80   6e-14
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    78   2e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    77   4e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    76   7e-13
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    76   7e-13
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    76   7e-13
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    76   7e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    76   9e-13
protein update 2009. 7.18
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for VHN233 is cyt
5' end seq. ID VHN233F
5' end seq. 
>VHN233F.Seq
ATTTTGATATATTTTCCAATCTTTTTTTTATTTTTTTATTATTTTATTTTATAAGCTTTG
AAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTGGTCCA
GTTGGTTTGGCTACTGCTTACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTCTCGAA
AAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTACGTACA
ATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGAAAGAA
CTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATTTTGGT
GATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTA
GAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCA
TTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAAT
TTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAATGGTA
AGCNNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -