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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN454
Library VH
(Link to library)
Clone ID VHN454
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHN454P
(Link to Original site)
Representative DNA sequence 
>VHN454 (VHN454Q) /CSM/VH/VHN4-C/VHN454Q.Seq.d/
CTACTGGTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAAT
AGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGNNTACAGATGTGCCAAAGCTGGAAA
GAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGT
TGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAAC
CCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGAC
AGGTCTCCCAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATT
AGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGA
AATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCC
AGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACA
ATGTGGTTGTAAAATGGTAXXXXXXXXXXCNCATTTTTNNAGTTGAAGGTNTTNATNAGT
TACGNGCCNAANTANGTNTCAATTGGGGNTTNATCGANNAAGTTGAANATCCTCAAGATG
ATCNACNATNTGTTGACCCCCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTNAGAT
C
sequence update 2002.10.25
Translated Amino Acid sequence 
ywl*ALKKMREFLKDDYDVIVCGGGPVGLATXYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLPNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
CGCKMV---

---XIFXVEGXXXLRAXXXXNWGXIXXVEXPQDDXXXVDPHPXLXGPNXKKXR
Translated Amino Acid sequence (All Frames) 
Frame A:
llvisfeenerifkr*l*cnslwwwsswfgyxxqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfi
rtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmft
mwl*ng---

---XIFXVEGXXXLRAXXXXNWGXIXXVEXPQDDXXXVDPHPXLXGPNXKKXR

Frame B:
ywl*ALKKMREFLKDDYDVIVCGGGPVGLATXYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLPNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
CGCKMV---

---xfxxlkvxxsyxpxxvsigxxsxklxilkmixxxltpipi*xxxmxknxd

Frame C:
tgykl*rk*enf*kmimm**fvvvvqlvwllxtdvpklerkyfvsknqyslmevvvvvml
lecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvsqilviqimvqvvqkvly*
dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvyn
vvvkw---

---hfxs*rxxxvtxxxxxqlgxxrxs*xssr*stxc*ppsxfkxxxx*kixi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN454 (VHN454Q) /CSM/VH/VHN4-C/VHN454Q.Seq.d/                       1209   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1066   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1066   0.0
VHQ355 (VHQ355Q) /CSM/VH/VHQ3-C/VHQ355Q.Seq.d/                       1066   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1066   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1066   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1066   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                       1066   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1066   0.0
VHO630 (VHO630Q) /CSM/VH/VHO6-B/VHO630Q.Seq.d/                       1066   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425958) Dictyostelium discoideum cDNA clone:ddv57l14, 5' ...  1096   0.0    1
(BJ427810) Dictyostelium discoideum cDNA clone:ddv63n13, 5' ...  1066   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...  1066   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...  1066   0.0    1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...  1066   0.0    1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...  1066   0.0    1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...  1066   0.0    1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...  1066   0.0    1
(BJ426829) Dictyostelium discoideum cDNA clone:ddv60k08, 5' ...  1066   0.0    1
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ...  1066   0.0    1
dna update 2008.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   196   8e-49
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   105   1e-21
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    77   4e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    72   1e-11
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    72   2e-11
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    72   2e-11
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    72   2e-11
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    72   2e-11
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    71   3e-11
CP000783_2229(CP000783|pid:none) Enterobacter sakazakii ATCC BAA...    71   3e-11
protein update 2009. 7.18
PSORT 

 psg: 0.67  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHN454 is cyt
5' end seq. ID VHN454F
5' end seq. 
>VHN454F.Seq
CTACTGGTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAAT
AGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGNNTACAGATGTGCCAAAGCTGGAAA
GAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGT
TGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAAC
CCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGAC
AGGTCTCCCAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATT
AGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGA
AATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCC
AGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACA
ATGTGGTTGTAAAATGGTANNNNNNNNNN
Length of 5' end seq. 569
3' end seq. ID VHN454Z
3' end seq. 
>VHN454Z.Seq
NNNNNNNNNNCNCATTTTTNNAGTTGAAGGTNTTNATNAGTTACGNGCCNAANTANGTNT
CAATTGGGGNTTNATCGANNAAGTTGAANATCCTCAAGATGATCNACNATNTGTTGACCC
CCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTNAGATC
Length of 3' end seq. 162
Connected seq. ID VHN454P
Connected seq. 
>VHN454P.Seq
CTACTGGTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAAT
AGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGNNTACAGATGTGCCAAAGCTGGAAA
GAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGT
TGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAAC
CCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGAC
AGGTCTCCCAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATT
AGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGA
AATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCC
AGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACA
ATGTGGTTGTAAAATGGTA----------CNCATTTTTNNAGTTGAAGGTNTTNATNAGT
TACGNGCCNAANTANGTNTCAATTGGGGNTTNATCGANNAAGTTGAANATCCTCAAGATG
ATCNACNATNTGTTGACCCCCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTNAGAT
C
Length of connected seq. 711
Full length Seq ID -
Full length Seq. -
Length of full length seq. -