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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN847
Library VH
(Link to library)
Clone ID VHN847
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U13770-1
Original site URL
Representative seq. ID VHN847P
(Link to Original site)
Representative DNA sequence 
>VHN847 (VHN847Q) /CSM/VH/VHN8-B/VHN847Q.Seq.d/
ATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTT
TGTGGTGGTGGTCCAGTTGGTTTGGCTACTGNNTACAGATGTGCCAAAGCTGGAAAGAAA
GTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTT
AGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTT
GGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGT
CTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGA
CCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATT
ATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGAC
AATGGTGTTATCAATTTACCATTGGTATTACGTTXXXXXXXXXXGTNGATCNCNTTTTTC
AANNTGAAGGTNTTGATGAGTTACGNGCCNAANTACGTNTCAATTGGGGNTTCATCGANG
AAGTTGAANATCCNCAANATGATCNACAANATGNTGACCCCCNTCCCNATTTAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
il*ALKKMREFLKDDYDVIVCGGGPVGLATXYRCAKAGKKVLCLEKSVFFNGGGSSGDVV
RMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLLG
PIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLR---

---VDXXFQXEGXDELRAXXRXNWGFIXEVEXPQXDXQXXDPXPXL
Translated Amino Acid sequence (All Frames) 
Frame A:
il*ALKKMREFLKDDYDVIVCGGGPVGLATXYRCAKAGKKVLCLEKSVFFNGGGSSGDVV
RMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLLG
PIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLR---

---VDXXFQXEGXDELRAXXRXNWGFIXEVEXPQXDXQXXDPXPXL

Frame B:
fykl*rk*enf*kmimm**fvvvvqlvwllxtdvpklerkyfvsknqyslmevvvvvmll
ecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvly*d
qfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyv---

---xixffxxkvlmsyxpxyvsigxssxklxixxmixxmxtpxpi*

Frame C:
fisfeenerifkr*l*cnslwwwsswfgyxxqmcqswkestlsrkisil*wrw**w*cc*
nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfirt
nskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigit---

---xsxfsx*rx**vtxxxtxqlgxhrxs*xsxx*stxx*ppsxfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN847 (VHN847Q) /CSM/VH/VHN8-B/VHN847Q.Seq.d/                       1108   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1007   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1007   0.0
VHQ355 (VHQ355Q) /CSM/VH/VHQ3-C/VHQ355Q.Seq.d/                       1007   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1007   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1007   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1007   0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/                       1007   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1007   0.0
VHO630 (VHO630Q) /CSM/VH/VHO6-B/VHO630Q.Seq.d/                       1007   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427810) Dictyostelium discoideum cDNA clone:ddv63n13, 5' ...  1007   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...  1007   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...  1007   0.0    1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...  1007   0.0    1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...  1007   0.0    1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...  1007   0.0    1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...  1007   0.0    1
(BJ426829) Dictyostelium discoideum cDNA clone:ddv60k08, 5' ...  1007   0.0    1
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ...  1007   0.0    1
(BJ426274) Dictyostelium discoideum cDNA clone:ddv58n12, 5' ...  1007   0.0    1
dna update 2008.12. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   193   4e-48
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   103   3e-21
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    72   1e-11
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    72   2e-11
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    72   2e-11
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    71   2e-11
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    71   3e-11
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    71   3e-11
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    71   3e-11
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    71   3e-11
protein update 2009. 5.17
PSORT 

 psg: 0.67  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHN847 is cyt
5' end seq. ID VHN847F
5' end seq. 
>VHN847F.Seq
ATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTT
TGTGGTGGTGGTCCAGTTGGTTTGGCTACTGNNTACAGATGTGCCAAAGCTGGAAAGAAA
GTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTT
AGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTT
GGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGT
CTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGA
CCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATT
ATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGAC
AATGGTGTTATCAATTTACCATTGGTATTACGTTNNNNNNNNNN
Length of 5' end seq. 524
3' end seq. ID VHN847Z
3' end seq. 
>VHN847Z.Seq
NNNNNNNNNNGTNGATCNCNTTTTTCAANNTGAAGGTNTTGATGAGTTACGNGCCNAANT
ACGTNTCAATTGGGGNTTCATCGANGAAGTTGAANATCCNCAANATGATCNACAANATGN
TGACCCCCNTCCCNATTTAAG
Length of 3' end seq. 141
Connected seq. ID VHN847P
Connected seq. 
>VHN847P.Seq
ATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTT
TGTGGTGGTGGTCCAGTTGGTTTGGCTACTGNNTACAGATGTGCCAAAGCTGGAAAGAAA
GTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTT
AGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTT
GGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGT
CTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGA
CCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATT
ATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGAC
AATGGTGTTATCAATTTACCATTGGTATTACGTT----------GTNGATCNCNTTTTTC
AANNTGAAGGTNTTGATGAGTTACGNGCCNAANTACGTNTCAATTGGGGNTTCATCGANG
AAGTTGAANATCCNCAANATGATCNACAANATGNTGACCCCCNTCCCNATTTAAG
Length of connected seq. 645
Full length Seq ID -
Full length Seq. -
Length of full length seq. -