VHO851
Library VH
(Link to library)
Clone ID VHO851
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGCCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
YGCKMVS---


Translated Amino Acid sequence (All Frames)
Frame A:
ilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvvm
llecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvly
*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvy
nmvvkw*a---


Frame B:
fyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*c
c*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryfi
rtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmft
iwl*ngk---


Frame C:
fil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGDV
VRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTLL
GPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQ
YGCKMVS---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1120 0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 1120 0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 1120 0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 1120 0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/ 1120 0.0
VHK762 (VHK762Q) /CSM/VH/VHK7-C/VHK762Q.Seq.d/ 1120 0.0
VHK414 (VHK414Q) /CSM/VH/VHK4-A/VHK414Q.Seq.d/ 1120 0.0
VHI858 (VHI858Q) /CSM/VH/VHI8-C/VHI858Q.Seq.d/ 1120 0.0
VHI370 (VHI370Q) /CSM/VH/VHI3-C/VHI370Q.Seq.d/ 1120 0.0
VHH234 (VHH234Q) /CSM/VH/VHH2-B/VHH234Q.Seq.d/ 1120 0.0

own update 2004. 8. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ... 1120 0.0 1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ... 1120 0.0 1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ... 1120 0.0 1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ... 1120 0.0 1
(BJ425148) Dictyostelium discoideum cDNA clone:ddv54d24, 5' ... 1120 0.0 1
(BJ424503) Dictyostelium discoideum cDNA clone:ddv52l15, 5' ... 1120 0.0 1
(BJ424024) Dictyostelium discoideum cDNA clone:ddv51l04, 5' ... 1120 0.0 1
(BJ423238) Dictyostelium discoideum cDNA clone:ddv48d16, 5' ... 1120 0.0 1
(BJ422974) Dictyostelium discoideum cDNA clone:ddv47l17, 5' ... 1120 0.0 1
(BJ422225) Dictyostelium discoideum cDNA clone:ddv45c10, 5' ... 1120 0.0 1
dna update 2008.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 204 2e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 109 5e-23
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 80 5e-14
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 78 2e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 77 3e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 76 6e-13
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 76 6e-13
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 76 6e-13
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 76 6e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 76 7e-13
protein update 2009. 7.19
PSORT

psg: 0.67 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHO851 is cyt

5' end seq. ID VHO851F
5' end seq.
>VHO851F.Seq
ATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAA
TAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAA
AGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATG
TTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAA
CCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGA
CAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTAT
TAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAG
AAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTC
CAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTAC
AATATGGTTGTAAAATGGTAAGCCANNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -