VHP888
Library VH
(Link to library)
Clone ID VHP888
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHP888P
(Link to Original site)
Representative DNA sequence
>VHP888 (VHP888Q) /CSM/VH/VHP8-D/VHP888Q.Seq.d/
AAATAAATTTTTAAAATCTTAATAAAAATTAGTGTTAAATTTTTTTTAAATCTTTTTTTT
AATAATAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTG
GTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTC
TCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTAC
GTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGA
AAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATT
TTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAA
ATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGT
ATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTA
TCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAA
TGGTAAGCXXXXXXXXXXCAATGTTCCAGTNGGTACCCTCCAACAATTATTTGTTGATTA
CAAANGNTGGGATTGGNANAANGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCC
ATCNCAATTTTTTCAATTGTTCCCNTCCCTTACTAAACCNTCCCCANATGGNANATTCCN
TTTAGNTGGNGAANCAACATNTGTTCATCANGGGTGGGNCNTTGGTTTTTTTAACTNTGC
CTATNGNTCAGTCGATCNCATTTTTCAAGNTGAAGGTNTTGATGAGTTACGNGCCNAANT
ACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCNACAATATGT
TGACCCCCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTCAGATCAAATGTATCCCA
AGNTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCNANAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence
inf*nlnkn*c*iffksff***KMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCL
EKSVFFNGGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNF
GDPNYGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVI
NLPLVLRSLYKLCLQYGCKMVS---

---NVPVGTLQQLFVDYKXWDWXXDDYSSGAFXFYSPSQFFQLFPSLTKPSPXGXFXLXG
EXTXVHXGWXXGFFNXAYXSVDXIFQXEGXDELRAXXRFNWGXIXEVEXPQXDXQYVDPH
PXLXGPNXKKFRSNVSQXAXQPXXKXPXNFKPXK


Translated Amino Acid sequence (All Frames)
Frame A:
k*ifkilikisvkfflnlffnnrk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfv
sknqyslmevvvvvmllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*i
lviqimvqvvqkvly*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvl
siyhwyyvlftsyvynmvvkw*---

---qcssxypptiic*lqxxglxxx*lfirgixflqsixifsivpxpy*txpxwxipfxw
xxnxcssxvgxwff*lclxxsrshfsx*rx**vtxxxtfqlgxxrxs*xsxx*stic*pp
sxfkxxxx*kiqikcipxcxstxixxsxkl*txkn

Frame B:
nkflks**klvlnff*iffliienerifkr*l*cnslwwwsswfgyciqmcqswkestls
rkisil*wrw**w*cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkf
w*sklwcrwsrryfirtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcy
qftigitfslqvmftiwl*ngk---

---NVPVGTLQQLFVDYKXWDWXXDDYSSGAFXFYSPSQFFQLFPSLTKPSPXGXFXLXG
EXTXVHXGWXXGFFNXAYXSVDXIFQXEGXDELRAXXRFNWGXIXEVEXPQXDXQYVDPH
PXLXGPNXKKFRSNVSQXAXQPXXKXPXNFKPXK

Frame C:
inf*nlnkn*c*iffksff***KMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCL
EKSVFFNGGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNF
GDPNYGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVI
NLPLVLRSLYKLCLQYGCKMVS---

---mfqxvpsnnyllitxxgigxxmiihqghlxftvhxnffncsxpllnxpxmxxsx*xx
xqhxfixggxlvfltxpxxqsixffkxkvlmsyxpxyvsigxxsxklxixxmixnmltpi
pi*xxxmxknsdqmypkxpfnqxxkxqxtlnxxk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP888 (VHP888Q) /CSM/VH/VHP8-D/VHP888Q.Seq.d/ 1606 0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1074 0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 1074 0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 1074 0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 1074 0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 1074 0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/ 1074 0.0
VHM668 (VHM668Q) /CSM/VH/VHM6-C/VHM668Q.Seq.d/ 1074 0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/ 1074 0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/ 1074 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427603) Dictyostelium discoideum cDNA clone:ddv62p22, 5' ... 1086 0.0 1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ... 1074 0.0 1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ... 1074 0.0 1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ... 1074 0.0 1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ... 1074 0.0 1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ... 1074 0.0 1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ... 1074 0.0 1
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ... 1074 0.0 1
(BJ425704) Dictyostelium discoideum cDNA clone:ddv56g18, 5' ... 1074 0.0 1
(BJ425519) Dictyostelium discoideum cDNA clone:ddv56a04, 5' ... 1074 0.0 1
dna update 2008.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 204 6e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 109 1e-22
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 80 2e-13
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 78 6e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 77 1e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 76 2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 76 2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 76 2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 76 2e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 76 2e-12
protein update 2009. 7.21
PSORT

psg: 0.75 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for VHP888 is cyt

5' end seq. ID VHP888F
5' end seq.
>VHP888F.Seq
AAATAAATTTTTAAAATCTTAATAAAAATTAGTGTTAAATTTTTTTTAAATCTTTTTTTT
AATAATAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTG
GTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTC
TCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTAC
GTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGA
AAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATT
TTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAA
ATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGT
ATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTA
TCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAA
TGGTAAGCNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID VHP888Z
3' end seq.
>VHP888Z.Seq
NNNNNNNNNNCAATGTTCCAGTNGGTACCCTCCAACAATTATTTGTTGATTACAAANGNT
GGGATTGGNANAANGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCCATCNCAAT
TTTTTCAATTGTTCCCNTCCCTTACTAAACCNTCCCCANATGGNANATTCCNTTTAGNTG
GNGAANCAACATNTGTTCATCANGGGTGGGNCNTTGGTTTTTTTAACTNTGCCTATNGNT
CAGTCGATCNCATTTTTCAAGNTGAAGGTNTTGATGAGTTACGNGCCNAANTACGTTTCA
ATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCNACAATATGTTGACCCCC
ATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCN
TTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCNANAAAAAC
Length of 3' end seq. 466
Connected seq. ID VHP888P
Connected seq.
>VHP888P.Seq
AAATAAATTTTTAAAATCTTAATAAAAATTAGTGTTAAATTTTTTTTAAATCTTTTTTTT
AATAATAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTG
GTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTC
TCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTAC
GTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGA
AAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATT
TTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAA
ATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGT
ATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTA
TCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAA
TGGTAAGC----------CAATGTTCCAGTNGGTACCCTCCAACAATTATTTGTTGATTA
CAAANGNTGGGATTGGNANAANGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCC
ATCNCAATTTTTTCAATTGTTCCCNTCCCTTACTAAACCNTCCCCANATGGNANATTCCN
TTTAGNTGGNGAANCAACATNTGTTCATCANGGGTGGGNCNTTGGTTTTTTTAACTNTGC
CTATNGNTCAGTCGATCNCATTTTTCAAGNTGAAGGTNTTGATGAGTTACGNGCCNAANT
ACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCNACAATATGT
TGACCCCCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTCAGATCAAATGTATCCCA
AGNTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCNANAAAAAC
Length of connected seq. 1064
Full length Seq ID -
Full length Seq. -
Length of full length seq. -