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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP888
Library VH
(Link to library)
Clone ID VHP888
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHP888P
(Link to Original site)
Representative DNA sequence 
>VHP888 (VHP888Q) /CSM/VH/VHP8-D/VHP888Q.Seq.d/
AAATAAATTTTTAAAATCTTAATAAAAATTAGTGTTAAATTTTTTTTAAATCTTTTTTTT
AATAATAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTG
GTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTC
TCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTAC
GTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGA
AAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATT
TTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAA
ATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGT
ATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTA
TCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAA
TGGTAAGCXXXXXXXXXXCAATGTTCCAGTNGGTACCCTCCAACAATTATTTGTTGATTA
CAAANGNTGGGATTGGNANAANGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCC
ATCNCAATTTTTTCAATTGTTCCCNTCCCTTACTAAACCNTCCCCANATGGNANATTCCN
TTTAGNTGGNGAANCAACATNTGTTCATCANGGGTGGGNCNTTGGTTTTTTTAACTNTGC
CTATNGNTCAGTCGATCNCATTTTTCAAGNTGAAGGTNTTGATGAGTTACGNGCCNAANT
ACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCNACAATATGT
TGACCCCCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTCAGATCAAATGTATCCCA
AGNTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCNANAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
inf*nlnkn*c*iffksff***KMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCL
EKSVFFNGGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNF
GDPNYGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVI
NLPLVLRSLYKLCLQYGCKMVS---

---NVPVGTLQQLFVDYKXWDWXXDDYSSGAFXFYSPSQFFQLFPSLTKPSPXGXFXLXG
EXTXVHXGWXXGFFNXAYXSVDXIFQXEGXDELRAXXRFNWGXIXEVEXPQXDXQYVDPH
PXLXGPNXKKFRSNVSQXAXQPXXKXPXNFKPXK
Translated Amino Acid sequence (All Frames) 
Frame A:
k*ifkilikisvkfflnlffnnrk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfv
sknqyslmevvvvvmllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*i
lviqimvqvvqkvly*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvl
siyhwyyvlftsyvynmvvkw*---

---qcssxypptiic*lqxxglxxx*lfirgixflqsixifsivpxpy*txpxwxipfxw
xxnxcssxvgxwff*lclxxsrshfsx*rx**vtxxxtfqlgxxrxs*xsxx*stic*pp
sxfkxxxx*kiqikcipxcxstxixxsxkl*txkn

Frame B:
nkflks**klvlnff*iffliienerifkr*l*cnslwwwsswfgyciqmcqswkestls
rkisil*wrw**w*cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkf
w*sklwcrwsrryfirtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcy
qftigitfslqvmftiwl*ngk---

---NVPVGTLQQLFVDYKXWDWXXDDYSSGAFXFYSPSQFFQLFPSLTKPSPXGXFXLXG
EXTXVHXGWXXGFFNXAYXSVDXIFQXEGXDELRAXXRFNWGXIXEVEXPQXDXQYVDPH
PXLXGPNXKKFRSNVSQXAXQPXXKXPXNFKPXK

Frame C:
inf*nlnkn*c*iffksff***KMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCL
EKSVFFNGGGSSGDVVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNF
GDPNYGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVI
NLPLVLRSLYKLCLQYGCKMVS---

---mfqxvpsnnyllitxxgigxxmiihqghlxftvhxnffncsxpllnxpxmxxsx*xx
xqhxfixggxlvfltxpxxqsixffkxkvlmsyxpxyvsigxxsxklxixxmixnmltpi
pi*xxxmxknsdqmypkxpfnqxxkxqxtlnxxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP888 (VHP888Q) /CSM/VH/VHP8-D/VHP888Q.Seq.d/                       1606   0.0
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1074   0.0
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/                       1074   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1074   0.0
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/                       1074   0.0
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/                       1074   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                       1074   0.0
VHM668 (VHM668Q) /CSM/VH/VHM6-C/VHM668Q.Seq.d/                       1074   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                       1074   0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/                       1074   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427603) Dictyostelium discoideum cDNA clone:ddv62p22, 5' ...  1086   0.0    1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ...  1074   0.0    1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ...  1074   0.0    1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ...  1074   0.0    1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ...  1074   0.0    1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ...  1074   0.0    1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ...  1074   0.0    1
(BJ425811) Dictyostelium discoideum cDNA clone:ddv56m21, 5' ...  1074   0.0    1
(BJ425704) Dictyostelium discoideum cDNA clone:ddv56g18, 5' ...  1074   0.0    1
(BJ425519) Dictyostelium discoideum cDNA clone:ddv56a04, 5' ...  1074   0.0    1
dna update 2008.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   204   6e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   109   1e-22
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    80   2e-13
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    78   6e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    77   1e-12
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    76   2e-12
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    76   2e-12
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    76   2e-12
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    76   2e-12
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    76   2e-12
protein update 2009. 7.21
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHP888 is cyt
5' end seq. ID VHP888F
5' end seq. 
>VHP888F.Seq
AAATAAATTTTTAAAATCTTAATAAAAATTAGTGTTAAATTTTTTTTAAATCTTTTTTTT
AATAATAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTG
GTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTC
TCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTAC
GTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGA
AAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATT
TTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAA
ATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGT
ATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTA
TCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAA
TGGTAAGCNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID VHP888Z
3' end seq. 
>VHP888Z.Seq
NNNNNNNNNNCAATGTTCCAGTNGGTACCCTCCAACAATTATTTGTTGATTACAAANGNT
GGGATTGGNANAANGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCCATCNCAAT
TTTTTCAATTGTTCCCNTCCCTTACTAAACCNTCCCCANATGGNANATTCCNTTTAGNTG
GNGAANCAACATNTGTTCATCANGGGTGGGNCNTTGGTTTTTTTAACTNTGCCTATNGNT
CAGTCGATCNCATTTTTCAAGNTGAAGGTNTTGATGAGTTACGNGCCNAANTACGTTTCA
ATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCNACAATATGTTGACCCCC
ATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCN
TTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCNANAAAAAC
Length of 3' end seq. 466
Connected seq. ID VHP888P
Connected seq. 
>VHP888P.Seq
AAATAAATTTTTAAAATCTTAATAAAAATTAGTGTTAAATTTTTTTTAAATCTTTTTTTT
AATAATAGAAAATGAGAGAATTTTTAAAAGATGATTATGATGTAATAGTTTGTGGTGGTG
GTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTGGAAAGAAAGTACTTTGTC
TCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTGATGTTGTTAGAATGTTAC
GTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATGAAACCCTTGGACTCTGGA
AAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGATGACAGGTCTCCTAAATT
TTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAA
ATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGT
ATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTA
TCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAA
TGGTAAGC----------CAATGTTCCAGTNGGTACCCTCCAACAATTATTTGTTGATTA
CAAANGNTGGGATTGGNANAANGATGATTATTCATCAGGGGCATTTGNTTTTTACAGTCC
ATCNCAATTTTTTCAATTGTTCCCNTCCCTTACTAAACCNTCCCCANATGGNANATTCCN
TTTAGNTGGNGAANCAACATNTGTTCATCANGGGTGGGNCNTTGGTTTTTTTAACTNTGC
CTATNGNTCAGTCGATCNCATTTTTCAAGNTGAAGGTNTTGATGAGTTACGNGCCNAANT
ACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCNCAANATGATCNACAATATGT
TGACCCCCATCCCNATTTAAGNGGNCCNAATGNTAAAAAATTCAGATCAAATGTATCCCA
AGNTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCNANAAAAAC
Length of connected seq. 1064
Full length Seq ID -
Full length Seq. -
Length of full length seq. -